PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna08757.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bZIP

Protein Properties

Length: 367aa MW: 39534.4 Da PI: 5.5966

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna08757.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	53.2	6.3e-17	166	220	3	57
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++kr rr+ +NRe+ArrsR+RK++ ++eLe v+ L eN++L +l ++++ mrna08757.1-v1.0-hybrid 166 DIKRIRRMVSNRESARRSRRRKQQHLQELEGQVDILRVENSTLYRQLTDASQQYR 220 58*****************************************977776666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	18	No hit	No description
SMART	SM00338	1.6E-16	164	228	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.289	166	218	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-12	167	219	No hit	No description
Pfam	PF00170	1.5E-13	167	218	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.4E-12	168	220	No hit	No description
PROSITE pattern	PS00036	0	171	186	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009005	anatomy	root
PO:0007134	developmental stage	sporophyte vegetative stage

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MERNSAAVHS HTMFGSSCGG DHLKRSPSQL DFEECLQKIA RGVTAESHDR SFAETGDFFA 60 ETGDFFSGDL TFAFKNRDIM DGFSSSNGLM ETLLSPQNLT PKNSSISATM DSQSSICVGT 120 PTSAANPVGQ DNQARGATSG SSGDQSDEDD FDIEAGPCGD STDPLDIKRI RRMVSNRESA 180 RRSRRRKQQH LQELEGQVDI LRVENSTLYR QLTDASQQYR DADTNNRVLK SDVEALRAKV 240 KLAEDMVARG SLTSSFNQLL QGHLSIPQPL NPHTLRGVAH VSPTITIHGD DTSYAGIAVS 300 GQNSGMGLGN AAGMTNSNMG TRIMSDAEEP QCRRTINKAF HLNARQGSNE LSNGSNGVSN 360 LNLAND*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MERNSAAVHS HTMFGSSCGG DHLKRSPSQL DFEECLQKIA RGVTAESHDR SFAETGDFFA  60
ETGDFFSGDL TFAFKNRDIM DGFSSSNGLM ETLLSPQNLT PKNSSISATM DSQSSICVGT  120
PTSAANPVGQ DNQARGATSG SSGDQSDEDD FDIEAGPCGD STDPLDIKRI RRMVSNRESA  180
RRSRRRKQQH LQELEGQVDI LRVENSTLYR QLTDASQQYR DADTNNRVLK SDVEALRAKV  240
KLAEDMVARG SLTSSFNQLL QGHLSIPQPL NPHTLRGVAH VSPTITIHGD DTSYAGIAVS  300
GQNSGMGLGN AAGMTNSNMG TRIMSDAEEP QCRRTINKAF HLNARQGSNE LSNGSNGVSN  360
LNLAND*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	187	RRSRRRKQ
2	182	187	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna08757.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by glucose. {ECO:0000269\|PubMed:18841482}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004291263.1	0.0	PREDICTED: basic leucine zipper 9
Swissprot	Q9FUD3	2e-66	BZIP9_ARATH; Basic leucine zipper 9
TrEMBL	A0A2P6PZU7	1e-180	A0A2P6PZU7_ROSCH; Putative transcription factor bZIP family
STRING	XP_004291263.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4195	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	5e-53	basic leucine zipper 9

Link Out ? help Back to Top
Phytozome	mrna08757.1-v1.0-hybrid

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ortiz-Espín A, et al. Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions. J. Exp. Bot., 2017. 68(5): p. 1025-1038 [PMID:28184497] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]