PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna08567.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 875aa MW: 100468 Da PI: 7.9624 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 62.9 | 9.2e-20 | 87 | 172 | 2 | 88 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn 86 fYn+YA++ GF +r s s++s +g +r fvCs egkr ++k++ +++raetr gC+a++k+k + +gk+ v ++ +H+ mrna08567.1-v1.0-hybrid 87 FYNRYAYRFGFGTRLSISHTS-SSGLLRDRLFVCSAEGKRGKDKRN-LYVKSHRAETRFGCRARMKIKYDLkSGKYTVVEFFADHT 170 9***************99998.7888*****************999.89999*****************988************** PP FAR1 87 He 88 H mrna08567.1-v1.0-hybrid 171 HV 172 *5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.5E-15 | 87 | 172 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.3E-33 | 296 | 390 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.1E-8 | 565 | 610 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.274 | 574 | 612 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.1E-9 | 587 | 614 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 875 aa Download sequence Send to blast |
MEREIPMNIE LKQLINTGSG DCQISSTSDF ENGTDLNGFI EVESNEEESE EDTRPSEKAD 60 SIHSRMCQEL IPVVSMEFAT EDDALAFYNR YAYRFGFGTR LSISHTSSSG LLRDRLFVCS 120 AEGKRGKDKR NLYVKSHRAE TRFGCRARMK IKYDLKSGKY TVVEFFADHT HVTSTPSKTH 180 RFRSHRKISI AQNVQADMAE ASGLNPKETL ELLSRQAGGR EHLGFIPEDY RNYLRSKRTR 240 EMKCGDTGGV LEYLQRMQLN NPSFTYAIQV DANELITNIF WADAKMKVDY DYFGDVVCFD 300 TTYRKNKEGR PFAMFVGVNN HKQTLIFGAA LLYDETAETF MWLFDTFANT MSGKKPKSIL 360 TDQDAAMAKA LASQWPETHH RLCIWHIYQN AAKHLKSVFE KFNDFAEDFS SIIYDYEDVE 420 DFLIAWKKML EKYNLQENTW LGRLFDLKEK WALVYGRETF CADITTTQRS ESMNNVVKKY 480 VSYKYDLLRF FRHFQRLVDD RRYNELVADF KASQTTPALS FPVKILRKAT KVYTPAVFKW 540 FQVELCKAHD CTLRLFSEIG TMHIYEVTAH GKRFHHIVTY DSADNTISCS CKKFEFSGIL 600 CSHALKVLST NNVKTIPSQY ISKRWTKDIR DQMPKVSCPN ANEDDSNAKI ASRYRELARL 660 HTELATVAAE SDEAYEITVV ALHKTLVDVK ASLKKKTSQE APKATSPINN SALEVITNDI 720 DDHRVRGIKV KERIVRKEDS IRPKNALEKL LGSKRHRKEV NTSPRHQKEP ELNHTNENST 780 CVPTTLVDST SVHASQNLVN EQEVNVTTSG MDICIKDRVL PQQLHFLQHV HQNPQSTMHA 840 TMEQYMKHNH GAQYSEVTFF SFGVVNLLSE ANYA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna08567.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004292935.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2P6PSC3 | 0.0 | A0A2P6PSC3_ROSCH; Putative transcription factor FAR family | ||||
STRING | XP_004292935.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-128 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | mrna08567.1-v1.0-hybrid |