PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08567.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 875aa    MW: 100468 Da    PI: 7.9624
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08567.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.99.2e-2087172288
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn 86 
                              fYn+YA++ GF +r s s++s  +g   +r fvCs egkr ++k++    +++raetr gC+a++k+k +  +gk+ v ++  +H+
  mrna08567.1-v1.0-hybrid  87 FYNRYAYRFGFGTRLSISHTS-SSGLLRDRLFVCSAEGKRGKDKRN-LYVKSHRAETRFGCRARMKIKYDLkSGKYTVVEFFADHT 170
                              9***************99998.7888*****************999.89999*****************988************** PP

                     FAR1  87 He 88 
                              H 
  mrna08567.1-v1.0-hybrid 171 HV 172
                              *5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-1587172IPR004330FAR1 DNA binding domain
PfamPF105516.3E-33296390IPR018289MULE transposase domain
PfamPF044341.1E-8565610IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.274574612IPR007527Zinc finger, SWIM-type
SMARTSM005754.1E-9587614IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    Send to blast
MEREIPMNIE LKQLINTGSG DCQISSTSDF ENGTDLNGFI EVESNEEESE EDTRPSEKAD  60
SIHSRMCQEL IPVVSMEFAT EDDALAFYNR YAYRFGFGTR LSISHTSSSG LLRDRLFVCS  120
AEGKRGKDKR NLYVKSHRAE TRFGCRARMK IKYDLKSGKY TVVEFFADHT HVTSTPSKTH  180
RFRSHRKISI AQNVQADMAE ASGLNPKETL ELLSRQAGGR EHLGFIPEDY RNYLRSKRTR  240
EMKCGDTGGV LEYLQRMQLN NPSFTYAIQV DANELITNIF WADAKMKVDY DYFGDVVCFD  300
TTYRKNKEGR PFAMFVGVNN HKQTLIFGAA LLYDETAETF MWLFDTFANT MSGKKPKSIL  360
TDQDAAMAKA LASQWPETHH RLCIWHIYQN AAKHLKSVFE KFNDFAEDFS SIIYDYEDVE  420
DFLIAWKKML EKYNLQENTW LGRLFDLKEK WALVYGRETF CADITTTQRS ESMNNVVKKY  480
VSYKYDLLRF FRHFQRLVDD RRYNELVADF KASQTTPALS FPVKILRKAT KVYTPAVFKW  540
FQVELCKAHD CTLRLFSEIG TMHIYEVTAH GKRFHHIVTY DSADNTISCS CKKFEFSGIL  600
CSHALKVLST NNVKTIPSQY ISKRWTKDIR DQMPKVSCPN ANEDDSNAKI ASRYRELARL  660
HTELATVAAE SDEAYEITVV ALHKTLVDVK ASLKKKTSQE APKATSPINN SALEVITNDI  720
DDHRVRGIKV KERIVRKEDS IRPKNALEKL LGSKRHRKEV NTSPRHQKEP ELNHTNENST  780
CVPTTLVDST SVHASQNLVN EQEVNVTTSG MDICIKDRVL PQQLHFLQHV HQNPQSTMHA  840
TMEQYMKHNH GAQYSEVTFF SFGVVNLLSE ANYA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08567.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292935.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2P6PSC30.0A0A2P6PSC3_ROSCH; Putative transcription factor FAR family
STRINGXP_004292935.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-128FAR1-related sequence 5