PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna08566.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bZIP | ||||||||
Protein Properties | Length: 217aa MW: 23379.2 Da PI: 9.9966 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45.7 | 1.4e-14 | 151 | 193 | 5 | 47 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 r +r++kNRe+A+rsR+RK+a++ eLe k + L++eN +L+ mrna08566.1-v1.0-hybrid 151 VRHKRMIKNRESASRSRARKQAYTSELELKLELLKEENARLRM 193 699**************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.7E-7 | 147 | 206 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.5E-12 | 152 | 194 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.0E-13 | 152 | 197 | No hit | No description |
PROSITE profile | PS50217 | 10.14 | 152 | 194 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.19E-10 | 152 | 196 | No hit | No description |
CDD | cd14707 | 1.11E-14 | 152 | 203 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 154 | 169 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MTMEDVWKDI SLASLCDHSS PGAAGSSATR NDPAGVRGFI FQDFMAAAST KLAPSSLATD 60 LGPPPPANLL SLSSSGSDHF QQYQVHNSSA TTSTNTSAPP NLAKPNPDST TRPSSSLISF 120 SNKSALEALG SSSYCKKRAV EEENGENSRH VRHKRMIKNR ESASRSRARK QAYTSELELK 180 LELLKEENAR LRMQQQKFCL ATPVAPATTL KRAHSM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna08566.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004291338.1 | 1e-158 | PREDICTED: protein FD | ||||
TrEMBL | A0A2P6PZB5 | 8e-74 | A0A2P6PZB5_ROSCH; Putative transcription factor bZIP family | ||||
STRING | XP_004291338.1 | 1e-158 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3755 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 5e-15 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna08566.1-v1.0-hybrid |