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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
mrna08483.1-v1.0-hybrid |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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| Family |
BBR-BPC |
| Protein Properties |
Length: 381aa MW: 42401.1 Da PI: 9.9896 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| mrna08483.1-v1.0-hybrid | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 391.7 | 1.1e-119 | 40 | 380 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...........pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaern 71
mdd g+re r k+ +y+ p+ +s+k q+m+++aerda+i+ernla+sekkaa+aerdmaflqrd+a+aern
mrna08483.1-v1.0-hybrid 40 MDDGGHREngRLKAeQYKaaqgqwlmqhqPHqPSMK-----QIMALMAERDAAIQERNLAFSEKKAALAERDMAFLQRDAAIAERN 120
999999998999999999888877775542234555.....********************************************* PP
GAGA_bind 72 kalverdnkllalllvensla.....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkk 150
+a++erdn++++l+++ens+ s++p+g+q+++g k++++ qq +++ p++++ ++++re++++++lp+ ++ a +++++
mrna08483.1-v1.0-hybrid 121 NAIMERDNAIATLQYRENSSLtsgnlSSCPPGCQISRGIKHMHNPQQhVHHlPHMNEASYGTREMHTNDSLPLPPDPPPAPKSRQT 206
******************988999999********************55559********************99877776666555 PP
GAGA_bind 151 kkrqrakkpkekkakkkkkksekskkkvkkesader.............................skaekksidlvlngvslDest 207
k +pke+k+ + kk++ks +kvk+es+d + sk+++k++dl+ln+v++D+st
mrna08483.1-v1.0-hybrid 207 K------RPKEPKTIPPIKKPAKSPRKVKRESEDLNkmtfdrlhewkggqemcvgaedlnkqlgvSKSDWKCQDLGLNQVAYDDST 286
5......555555555555555555555555555333566668899**************************************** PP
GAGA_bind 208 lPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHG 293
+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP+++++r+aR++grKmS++af+klL++LaaeG+dlsnpvDLkd WAkHG
mrna08483.1-v1.0-hybrid 287 MPAPVCSCTGVLRQCYKWGNGGWQSSCCTTTMSIYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDNWAKHG 372
************************************************************************************** PP
GAGA_bind 294 tnkfvtir 301
tn+++ti+
mrna08483.1-v1.0-hybrid 373 TNRYITIK 380
*******8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MRRAQKLENS SSSSSTRPSL FHGVSSSSSS LIRVSPSYLM DDGGHRENGR LKAEQYKAAQ 60
GQWLMQHQPH QPSMKQIMAL MAERDAAIQE RNLAFSEKKA ALAERDMAFL QRDAAIAERN 120
NAIMERDNAI ATLQYRENSS LTSGNLSSCP PGCQISRGIK HMHNPQQHVH HLPHMNEASY 180
GTREMHTNDS LPLPPDPPPA PKSRQTKRPK EPKTIPPIKK PAKSPRKVKR ESEDLNKMTF 240
DRLHEWKGGQ EMCVGAEDLN KQLGVSKSDW KCQDLGLNQV AYDDSTMPAP VCSCTGVLRQ 300
CYKWGNGGWQ SSCCTTTMSI YPLPAVPNKR HARVGGRKMS GSAFNKLLSR LAAEGHDLSN 360
PVDLKDNWAK HGTNRYITIK *
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
