PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08479.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 285aa    MW: 31255.4 Da    PI: 7.1364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08479.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-1971120255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  mrna08479.1-v1.0-hybrid  71 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSSEAAMAYDAAARKLYG 120
                              69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.99E-2270130No hitNo description
PROSITE profilePS5103222.27371128IPR001471AP2/ERF domain
SMARTSM003807.5E-3571134IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2171130IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-3071129IPR001471AP2/ERF domain
PfamPF008471.2E-1371120IPR001471AP2/ERF domain
PRINTSPR003679.5E-107283IPR001471AP2/ERF domain
PRINTSPR003679.5E-1094110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDTICLVHLD KYHCSHSRSH VSVFCMMKML KSGMGSSVGV AERKTMKKPA QASSRKGCMR  60
GKGGPENAMC TYKGVRQRTW GKWVAEIREP NRGARLWLGT FDTSSEAAMA YDAAARKLYG  120
SEAKLNLPDQ IVPQFPNPPP DHNNNLHMAP VVSNSSSNTA ACFPPDISVP IMLQDRTNFP  180
VQIPFPNPGM QTSYGIAYEQ ANSSSSSSGS NTTMPMDTKE EKYEGVDKRF WENVSTNVLP  240
VFDDSIWAEA AMSLDFPVIE NHGIFASNFV DGNAWEALPA SWCA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1872128360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08479.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459131.10.0PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A3Q8TCZ11e-165A0A3Q8TCZ1_FRAAN; Transcription factor ERF31
STRINGXP_004292958.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-41ERF family protein