PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna08448.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 486aa MW: 53773.4 Da PI: 6.777 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.9 | 1.2e-50 | 17 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 + pGfrF+Ptdeel+++yLk+k+e+ + ++ evi+evdi+++ePwdLp k+v ++e+ew+fFs+r kky++g++++rat+sgyWka mrna08448.1-v1.0-hybrid 17 MFPGFRFSPTDEELISYYLKNKLESPEKSV-EVISEVDICNFEPWDLPaKSVIQSENEWFFFSPRGKKYPNGSQSRRATESGYWKA 101 579************************998.99***************667777899***************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tgk+++v+s +++++g+k+tLvf+ grapkge+t+W+mhey + mrna08448.1-v1.0-hybrid 102 TGKERNVKS-SSNVIGTKRTLVFHIGRAPKGERTEWIMHEYCM 143 *********.999****************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-56 | 10 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.129 | 17 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.3E-26 | 19 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0034976 | Biological Process | response to endoplasmic reticulum stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MGGISKEAQL SIAASSMFPG FRFSPTDEEL ISYYLKNKLE SPEKSVEVIS EVDICNFEPW 60 DLPAKSVIQS ENEWFFFSPR GKKYPNGSQS RRATESGYWK ATGKERNVKS SSNVIGTKRT 120 LVFHIGRAPK GERTEWIMHE YCMLNDKSQD SIVVCRLRKN SEFRLNDTTN RGSSSQSPLS 180 AQHNSENVVS EIGTDQGEKA IDCNSKKSTS SYDSHSIEQM DSASDSYQKL TPEVTQMESS 240 EHQKRSYDDD FFADILKDDI IKLDESSVSV ADNILPVVEN NSEAQQESMQ AVVSQAIPFQ 300 ELLGSEHHSA MCREQVIIPP LVANPVFLRN PRLKFNVAKL SASSLRASVS FSSSTPKFNV 360 DVKLKSFYST AMNNRYWSTI TTDSGRHASM CLTPNVIKQL GRVGGKWSTV YLYDPRSANT 420 SDSPLANGGC IHPNLSCHLT LYLHCLCANL VKALALDILC NSHGSACVFL STGAEPGFGS 480 WGVRI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-44 | 16 | 160 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-44 | 16 | 160 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-44 | 16 | 160 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-44 | 16 | 160 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-44 | 16 | 160 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-44 | 16 | 160 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna08448.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011459418.1 | 0.0 | PREDICTED: NAC domain-containing protein 89 isoform X1 | ||||
Swissprot | Q94F58 | 5e-90 | NAC89_ARATH; NAC domain-containing protein 89 | ||||
TrEMBL | A0A498IMV0 | 1e-170 | A0A498IMV0_MALDO; Uncharacterized protein | ||||
STRING | XP_004291689.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7315 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27300.1 | 2e-82 | NTM1-like 8 |
Link Out ? help Back to Top | |
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Phytozome | mrna08448.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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