PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08448.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 486aa    MW: 53773.4 Da    PI: 6.777
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08448.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.91.2e-50171431128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                              + pGfrF+Ptdeel+++yLk+k+e+ + ++ evi+evdi+++ePwdLp k+v ++e+ew+fFs+r kky++g++++rat+sgyWka
  mrna08448.1-v1.0-hybrid  17 MFPGFRFSPTDEELISYYLKNKLESPEKSV-EVISEVDICNFEPWDLPaKSVIQSENEWFFFSPRGKKYPNGSQSRRATESGYWKA 101
                              579************************998.99***************667777899***************************** PP

                      NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              tgk+++v+s +++++g+k+tLvf+ grapkge+t+W+mhey +
  mrna08448.1-v1.0-hybrid 102 TGKERNVKS-SSNVIGTKRTLVFHIGRAPKGERTEWIMHEYCM 143
                              *********.999****************************75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-5610159IPR003441NAC domain
PROSITE profilePS5100554.12917160IPR003441NAC domain
PfamPF023657.3E-2619142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MGGISKEAQL SIAASSMFPG FRFSPTDEEL ISYYLKNKLE SPEKSVEVIS EVDICNFEPW  60
DLPAKSVIQS ENEWFFFSPR GKKYPNGSQS RRATESGYWK ATGKERNVKS SSNVIGTKRT  120
LVFHIGRAPK GERTEWIMHE YCMLNDKSQD SIVVCRLRKN SEFRLNDTTN RGSSSQSPLS  180
AQHNSENVVS EIGTDQGEKA IDCNSKKSTS SYDSHSIEQM DSASDSYQKL TPEVTQMESS  240
EHQKRSYDDD FFADILKDDI IKLDESSVSV ADNILPVVEN NSEAQQESMQ AVVSQAIPFQ  300
ELLGSEHHSA MCREQVIIPP LVANPVFLRN PRLKFNVAKL SASSLRASVS FSSSTPKFNV  360
DVKLKSFYST AMNNRYWSTI TTDSGRHASM CLTPNVIKQL GRVGGKWSTV YLYDPRSANT  420
SDSPLANGGC IHPNLSCHLT LYLHCLCANL VKALALDILC NSHGSACVFL STGAEPGFGS  480
WGVRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-441616016165NO APICAL MERISTEM PROTEIN
1ut4_B6e-441616016165NO APICAL MERISTEM PROTEIN
1ut7_A6e-441616016165NO APICAL MERISTEM PROTEIN
1ut7_B6e-441616016165NO APICAL MERISTEM PROTEIN
4dul_A6e-441616016165NAC domain-containing protein 19
4dul_B6e-441616016165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08448.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459418.10.0PREDICTED: NAC domain-containing protein 89 isoform X1
SwissprotQ94F585e-90NAC89_ARATH; NAC domain-containing protein 89
TrEMBLA0A498IMV01e-170A0A498IMV0_MALDO; Uncharacterized protein
STRINGXP_004291689.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.12e-82NTM1-like 8
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]