PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08427.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 475aa    MW: 54371 Da    PI: 4.0286
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08427.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.81.3e-2091483128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkklele.evikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkrknr. 76 
                              pG rF P ++el+++yL++kv+g +++ + +vi e+d+y   +Pw++ +     +  a    ++k++yfF++++k++a+++r +r 
  mrna08427.1-v1.0-hybrid   9 PGQRFCPMEDELLMFYLEPKVNGMPVPGDgDVIYELDLYGDqDPWKIWQryeeeR--AndlrRNKDLYFFTQKKKTTAKSSRVKRt 92 
                              8************************7775156******97549****75244441..1345456689******************5 PP

                      NAM  77 atksgyWkatgkdkevlskkgel......vglkktLvfykgrapkgektdWvmheyrl 128
                              + + g+W+ +   k+v+  ++++       glkkt ++   ++ + +  +W+m e++l
  mrna08427.1-v1.0-hybrid  93 VGTGGTWRGQTAGKDVFLLDENQqptttvLGLKKTYTYR--NKGSVHDGRWIMYEFEL 148
                              556899**8888888887633333456669*****9998..44445689*******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.6097170IPR003441NAC domain
SuperFamilySSF1019414.32E-248169IPR003441NAC domain
PfamPF023655.0E-159148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MEGDRMPLPG QRFCPMEDEL LMFYLEPKVN GMPVPGDGDV IYELDLYGDQ DPWKIWQRYE  60
EERANDLRRN KDLYFFTQKK KTTAKSSRVK RTVGTGGTWR GQTAGKDVFL LDENQQPTTT  120
VLGLKKTYTY RNKGSVHDGR WIMYEFELHK SQLKKQVNKN DYVLCLLRKN DLLQEKKRKR  180
QQEEESLEDY VEDDEAVNTD PESVSEEEPQ EKRQRLLPSL EDEQEQFLQP APSLEAEQEA  240
LPTPLEDDPV FLQEGEFMEW QESDFASLEE LLQDESEARP TALEAEQVSL LVDENSGLQQ  300
LEAEPQLGED NLEQQLDAVP LFAAQKISGG IQFHPDENTV QQVGGEANMY TENLGDAMHG  360
ENWHMSFAEE LMNGEQPNTM EEGERNAVYP GFDEQVSLRV DENSGLKQLQ AEPQLGEKNL  420
EQQFDAVPLF AAQENWSMEE LTKELMNDEL LNAIEVGDTT RTSTLADENF SSAC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08427.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459909.10.0PREDICTED: uncharacterized protein LOC105350160
TrEMBLA0A2P6QGR31e-120A0A2P6QGR3_ROSCH; Putative transcription factor NAM family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.19e-19vascular related NAC-domain protein 7