PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna08427.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 475aa MW: 54371 Da PI: 4.0286 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.8 | 1.3e-20 | 9 | 148 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkklele.evikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkrknr. 76 pG rF P ++el+++yL++kv+g +++ + +vi e+d+y +Pw++ + + a ++k++yfF++++k++a+++r +r mrna08427.1-v1.0-hybrid 9 PGQRFCPMEDELLMFYLEPKVNGMPVPGDgDVIYELDLYGDqDPWKIWQryeeeR--AndlrRNKDLYFFTQKKKTTAKSSRVKRt 92 8************************7775156******97549****75244441..1345456689******************5 PP NAM 77 atksgyWkatgkdkevlskkgel......vglkktLvfykgrapkgektdWvmheyrl 128 + + g+W+ + k+v+ ++++ glkkt ++ ++ + + +W+m e++l mrna08427.1-v1.0-hybrid 93 VGTGGTWRGQTAGKDVFLLDENQqptttvLGLKKTYTYR--NKGSVHDGRWIMYEFEL 148 556899**8888888887633333456669*****9998..44445689*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.609 | 7 | 170 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.32E-24 | 8 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-15 | 9 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MEGDRMPLPG QRFCPMEDEL LMFYLEPKVN GMPVPGDGDV IYELDLYGDQ DPWKIWQRYE 60 EERANDLRRN KDLYFFTQKK KTTAKSSRVK RTVGTGGTWR GQTAGKDVFL LDENQQPTTT 120 VLGLKKTYTY RNKGSVHDGR WIMYEFELHK SQLKKQVNKN DYVLCLLRKN DLLQEKKRKR 180 QQEEESLEDY VEDDEAVNTD PESVSEEEPQ EKRQRLLPSL EDEQEQFLQP APSLEAEQEA 240 LPTPLEDDPV FLQEGEFMEW QESDFASLEE LLQDESEARP TALEAEQVSL LVDENSGLQQ 300 LEAEPQLGED NLEQQLDAVP LFAAQKISGG IQFHPDENTV QQVGGEANMY TENLGDAMHG 360 ENWHMSFAEE LMNGEQPNTM EEGERNAVYP GFDEQVSLRV DENSGLKQLQ AEPQLGEKNL 420 EQQFDAVPLF AAQENWSMEE LTKELMNDEL LNAIEVGDTT RTSTLADENF SSAC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna08427.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011459909.1 | 0.0 | PREDICTED: uncharacterized protein LOC105350160 | ||||
TrEMBL | A0A2P6QGR3 | 1e-120 | A0A2P6QGR3_ROSCH; Putative transcription factor NAM family |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71930.1 | 9e-19 | vascular related NAC-domain protein 7 |
Link Out ? help Back to Top | |
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Phytozome | mrna08427.1-v1.0-hybrid |