PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08411.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 693aa    MW: 76650.5 Da    PI: 7.498
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08411.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.6e-16375421455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               hn  ErrRRdriN+++ +L+el+P +      K +Ka++Le+A+eY+ksLq
  mrna08411.1-v1.0-hybrid 375 VHNLSERRRRDRINEKMRTLQELIPRC-----NKSDKASMLEEAIEYLKSLQ 421
                              6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.3E-20368429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-20369437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.07371420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-16374425No hitNo description
PfamPF000101.1E-13375421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-17377426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MENLLSKITL KFDIRIVQQW AVRSIGTYTM CNSELEEDLT IFVRNVSRSK LDKREEMNHH  60
VPDFEMEDDY SIPASSARPG KSTMSEDEIM ELVWHNGQLV MHSQSQRPAQ KRSKYDVVIP  120
EHITAPAAPP QQQPETQPQL FMHEDEMASW LHYPLNDDDS FCSDLLYNNS SNVQPNNNNT  180
ANSPPAPPRP PVHPLPRRSE AQNFLLFSRL NSNNNKSPFV SAAAAAPRSV VRETTTVVDS  240
SDTPLVGPGS RATESRLDNN DSPGISMSGG GGLATATTAT AASAGKDALT CEMSLTSSPG  300
GGSTSGSGSL SAEMVSTQKP PPPLPPPVDR KRKGREREPD DAECQSEQDV EFESGSAKKV  360
NRGSSSTKRS RAAEVHNLSE RRRRDRINEK MRTLQELIPR CNKSDKASML EEAIEYLKSL  420
QLQVQMMSMG CGMVPMMFPG VQPYMPMGMA RMGMGMGMGM EMGMNRPMMP YGNVLAGSPM  480
PTAAAAAHMG PRFPMPAYQM QTMLPNDPNR VQATNQSEHM SNPLGTESQN QTRAPNFADP  540
YQQYFTPQQM QMQLHQGRLL HFLGVYRPVL KAGTKWRIGD GSQVHIWNDA WIPSNPSPNV  600
GEHTEYSSAR NPVQDTTLSY EKRGWFTVKG AYWTARGHVL GSVLATTSSG NPFKKLWRLW  660
KTKVPGEVHI CVTICFLHEK GFSHTGDVHS SL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379384ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08411.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458065.10.0PREDICTED: transcription factor PIF1
TrEMBLA0A2P6PUJ40.0A0A2P6PUJ4_ROSCH; Putative transcription factor bHLH family
STRINGXP_004292266.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.18e-32phytochrome interacting factor 3-like 5