PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna08254.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 213aa MW: 23318.5 Da PI: 8.1553 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.4 | 2.4e-38 | 30 | 130 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrrkC+++C++apyf++eq + +fa++h++FGasnv+kll++lp ++r a+ ++ yeA+ar++dPvyG+v++i++lqq mrna08254.1-v1.0-hybrid 30 PCGACKFLRRKCVRGCIFAPYFCHEQgATHFAAIHRVFGASNVSKLLAQLPINDRCSAALTISYEAQARVQDPVYGCVSHIFALQQ 115 7*************************89********************************************************** PP DUF260 86 qleqlkaelallkee 100 q+ +l+a+la++ke+ mrna08254.1-v1.0-hybrid 116 QVINLQAQLASAKEQ 130 ***********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.234 | 29 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.1E-37 | 30 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MASHTPFASF LKCTSTLDSK ISMTGSAGSP CGACKFLRRK CVRGCIFAPY FCHEQGATHF 60 AAIHRVFGAS NVSKLLAQLP INDRCSAALT ISYEAQARVQ DPVYGCVSHI FALQQQVINL 120 QAQLASAKEQ ASKSNSTGSD NSLNPSWLQY SENLNMMNQQ HPNCFGNDEN FMVPELLNDI 180 YGRVKTSMQY DHFDGVASSV LEPILIRPRS RS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-36 | 24 | 127 | 5 | 107 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-36 | 24 | 127 | 5 | 107 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna08254.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289921.1 | 1e-119 | PREDICTED: LOB domain-containing protein 29-like | ||||
Swissprot | Q9M2J7 | 4e-61 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | A0A2P6PVF9 | 1e-105 | A0A2P6PVF9_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004289921.1 | 1e-118 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3571 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 2e-63 | lateral organ boundaries-domain 29 |
Link Out ? help Back to Top | |
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Phytozome | mrna08254.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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