PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08253.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 228aa    MW: 24982.5 Da    PI: 6.0036
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08253.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.79.5e-3971071100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                              +C aCk+lrr+C+++C++apyf++e+ + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqq
  mrna08253.1-v1.0-hybrid   7 PCGACKFLRRRCVRGCIFAPYFCHENgATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQ 92 
                              7***********************9989********************************************************** PP

                   DUF260  86 qleqlkaelallkee 100
                              q+ +l+a+la++k++
  mrna08253.1-v1.0-hybrid  93 QVVNLQAQLASIKDQ 107
                              **********99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.0836108IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRRCVR GCIFAPYFCH ENGATHFAAI HKVFGASNVS KLLAHLPVSD  60
RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LASIKDQAPQ SFVNGSEAVA  120
NPNQNCFPDL ENSSNSVPQV NSDYHINYGG TASYHENGIM SSNSIGSSNY DQNSGIRDEN  180
ASYGSFEEVS PPLQSSFNMQ MNNRQYWGHY DRDVDELQSM AFSYQHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3431017104LOB family transfactor Ramosa2.1
5ly0_B2e-3431017104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08253.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289920.11e-170PREDICTED: LOB domain-containing protein 29-like
SwissprotQ9SLB61e-66LBD17_ARATH; LOB domain-containing protein 17
TrEMBLA0A2P6PVG01e-146A0A2P6PVG0_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_004289920.11e-169(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35713366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.12e-57LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]