PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna08240.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 219aa MW: 24609.7 Da PI: 8.4849 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 25 | 47 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H+++H mrna08240.1-v1.0-hybrid 25 FTCSFCKREFRSAQALGGHMNVH 47 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.12E-6 | 22 | 51 | No hit | No description |
SMART | SM00355 | 0.0067 | 25 | 47 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.053 | 25 | 52 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-6 | 25 | 48 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 27 | 47 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDCVKLRFGR EEDLSDISPW TPKNFTCSFC KREFRSAQAL GGHMNVHRRD RARLRLLPPN 60 SVPSSSEYSP YPNPNPNPNP KSYFSPSPSS SSSLSGANKY LPHLVSPRST YVSTPSSGTL 120 DHENKKLMFN SGSHQHHAPP FLHPKTGLKR SSALDYEFGD QLNGFAGFAQ KHHLDDDFEV 180 VKKDEKHINM IREELDMGLL IKDPNKVDVD LELRLGHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-11 | 20 | 47 | 2 | 29 | superman protein |
2l1o_A | 2e-11 | 20 | 47 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna08240.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU830919 | 0.0 | GU830919.1 Fragaria virginiana subsp. virginiana Superman-like protein FRASUP1 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011457986.1 | 1e-161 | PREDICTED: transcriptional regulator SUPERMAN | ||||
TrEMBL | D5LGG9 | 1e-127 | D5LGG9_FRAVR; Superman-like protein FRASUP1 | ||||
STRING | EMJ02129 | 2e-35 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16963 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42410.1 | 2e-14 | zinc finger protein 11 |
Link Out ? help Back to Top | |
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Phytozome | mrna08240.1-v1.0-hybrid |