PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08231.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 505aa    MW: 55378.5 Da    PI: 6.0027
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08231.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-13355401455
                              HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  mrna08231.1-v1.0-hybrid 355 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYINDLQ 401
                              799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-4549234IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.028351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-18354421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-15354405No hitNo description
PfamPF000101.5E-10355401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-17355413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-15357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MGEKLWVNEE EKAVVESVLG TEACQLLISL ASENLLSDLA RPPGQLGVQQ GLSQLVQGSS  60
WNYAVFWQVV GLKSGGAALI WGDGHCKDTK GGGVGDESST RDGNLEGVQK KNEEVRKWVL  120
GKLHSCFGGS GEDNYARRLD RLSDVEMFYL TSMYFKFQLD SPYGPGESYK SGKSIWVSNV  180
ASCLHHYQSR SFLARLAGFQ TVVFVPMKSG VVELGSVKSI LEEQNVVDMV RSVFGVPSSV  240
QAKIYPKIFG HELSLGGPKP QPINIAFCPK VETDSSFPSE SFDLQAIGTS NGCRTEDSEV  300
KLFPHLSQIM GGNFSSTAGV SSSELPKDES SAQIDERKPR KRGRKPANGR EEPLNHVEAE  360
RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAITYINDL QTKIRVMETE KQMGSSSHMQ  420
FPIPEIDFQE RQEDAVVTMN CPLGSHPVSD VIRTLREHSI VAQDTNVSVT EDDTVIHTFS  480
IPTQGGDAEQ LKEKLVAALS KSSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-30349411264Transcription factor MYC2
5gnj_B6e-30349411264Transcription factor MYC2
5gnj_E6e-30349411264Transcription factor MYC2
5gnj_F6e-30349411264Transcription factor MYC2
5gnj_G6e-30349411264Transcription factor MYC2
5gnj_I6e-30349411264Transcription factor MYC2
5gnj_M6e-30349411264Transcription factor MYC2
5gnj_N6e-30349411264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336344RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08231.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457983.10.0PREDICTED: transcription factor bHLH3
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A2P6PVK10.0A0A2P6PVK1_ROSCH; Putative transcription factor bHLH family
STRINGXP_004289915.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-170bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]