PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08217.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 189aa    MW: 21278.2 Da    PI: 9.4712
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08217.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.42.3e-1065991855
                      AP2 18 eIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                             eIr  +     +  r +lg+f+taeeAa+a+++a++ ++g
  mrna08217.1-v1.0-hybrid 65 EIRNpF-----TkSRKWLGTFDTAEEAARAYDEAARGFRG 99
                             455533.....349*********************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.14441107IPR001471AP2/ERF domain
SMARTSM003807.2E-1462113IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1365108IPR016177DNA-binding domain
CDDcd000181.27E-1865108No hitNo description
Gene3DG3DSA:3.30.730.101.4E-1865108IPR001471AP2/ERF domain
PfamPF008476.0E-66695IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAPDDAMSTS LRPSRRHRSS GTSVGACSRL DEECCGGRRR NEEGGGERPI SEDVVVESAA  60
FSRPEIRNPF TKSRKWLGTF DTAEEAARAY DEAARGFRGF KAKTNFDDPP APKQLKPVIG  120
VKEVFWTPLV RRRGYVPAPV RSEYRGYELE KLREMMRKEE EKMKLVAESG EKKKPLLFDL  180
NLPADQLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08217.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292188.15e-85PREDICTED: ethylene-responsive transcription factor 9-like
TrEMBLA0A3S8T9412e-87A0A3S8T941_FRAAN; Transcription factor ERF64
STRINGXP_004292188.12e-84(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.11e-08ERF family protein