PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08188.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 293aa    MW: 31061.1 Da    PI: 6.258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08188.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-09141185554
                              HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                              h+++Er RR+ri +++  L+el+P+ +      K + a++L + ++Y+k L
  mrna08188.1-v1.0-hybrid 141 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIMDYVKFL 185
                              99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-15134195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.783136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-14138195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6141185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-10142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MANNPSEAQA DDFLEQILGL PNFASADANL TGADGGMAGP PSSMMLQLSS GDGSGHIGGG  60
FHGGVFPLGL SLEQGKAGFL KPEEASGSGK RFRDDVVDSR ASNVKNVFHG QPISSTVAAA  120
PHPPAMRPRV RARRGQATDP HSIAERLRRE RIAERIRALQ ELVPSVNKTD RAAMLDEIMD  180
YVKFLRLQVK VLSMSRLGGA GAVAPLVTDI PLSSVEEEGG EGGRNQPAWD KWSNDGTERQ  240
VAKLMEENVG AAMQFLQSKA LCIMPVSLAS AIYHTQPPDT SSVVKPEMNP PS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08188.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894100.0KP689410.1 Prunus pseudocerasus isolate Unigene16804 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289895.10.0PREDICTED: transcription factor UNE12
SwissprotO227681e-134UNE12_ARATH; Transcription factor UNE12
TrEMBLM5W8A11e-180M5W8A1_PRUPE; Uncharacterized protein
STRINGXP_004289895.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-106bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]