PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08154.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 501aa    MW: 53629.3 Da    PI: 6.6833
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08154.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.53.3e-14228286360
                              XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHH CS
                   bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklk 60 
                              + +r++r++kNRe+A rsR+RK+a++ eLe  + +Le eN++L ++e+e+ ++  +++ 
  mrna08154.1-v1.0-hybrid 228 AQQRQKRMIKNRESAARSRERKQAYQVELESMAVKLEVENEQLlREEAERTEERLKQHS 286
                              679**************************************963788888887777664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.2E-8226290IPR004827Basic-leucine zipper domain
PfamPF001703.9E-12228282IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.415228280IPR004827Basic-leucine zipper domain
CDDcd147075.76E-17230270No hitNo description
SuperFamilySSF579591.31E-8230281No hitNo description
Gene3DG3DSA:1.20.5.1706.4E-11231284No hitNo description
PROSITE patternPS000360233248IPR004827Basic-leucine zipper domain
SuperFamilySSF495033.89E-10289381IPR008972Cupredoxin
Gene3DG3DSA:2.60.40.4201.4E-10298382IPR008972Cupredoxin
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MASSKLISSS ASSSRSRNSD LSRRPKPKPS PPSSPSAAAA NQALQTTTNG GSYIHTANPA  60
PMTVDGLFRD VYSNTLPPAD AQITLMDSAG MEINSLGAAP SRPKTVDEVW EEIVSGESRR  120
ECKEELPDEM MTLEDFLARA GAVEENDVKD LHLAPPPETE RLCGGLSGGM FGFDQIALSP  180
FPSIEKMEGS IAGFGNGAAA AAAEVAASGG RGRGKRARAV LEPLDKAAQQ RQKRMIKNRE  240
SAARSRERKQ AYQVELESMA VKLEVENEQL LREEAERTEE RLKQHSHSTT MLVDGISEWK  300
NPTVHVGDSI IFQHKYHYNL YIFQNQGAFN VCNFTQATLL NKPDSTSYTW HPSRPGFFYF  360
SFSNGSLLNT CQDTQKLAIR VSLTTMAPVA APEPSSKTGS GGRGGSGGGV VSSSPTYPWP  420
FQPHQASLSP SPEPSVGSLL PNKGGGMPFI NSNPAVPLPT GEVDSATIRP IPTSGHQGQQ  480
VLVGLFAAQM ALFSVVLLML *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1400408GGRGGSGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08154.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290511.10.0PREDICTED: G-box-binding factor 4-like
TrEMBLA0A498IQR60.0A0A498IQR6_MALDO; Uncharacterized protein
STRINGXP_004290511.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.15e-35bZIP family protein