PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08112.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 520aa    MW: 58460 Da    PI: 7.0753
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08112.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.27.9e-50101381129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrF P+deelv++yL kkv++++     ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat++gyWkat
  mrna08112.1-v1.0-hybrid  10 LPPGFRFYPSDEELVCHYLYKKVTNEEALK-GTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTTGYWKAT 94 
                              79***********************99544.78***************88888999****************************** PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                              gkd+ v++  +ge vg++ktLvfy++rap+g kt W+mhe+rle
  mrna08112.1-v1.0-hybrid  95 GKDRMVVDPgTGEIVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138
                              ********978899***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-608156IPR003441NAC domain
PROSITE profilePS5100558.07210156IPR003441NAC domain
PfamPF023654.7E-2711137IPR003441NAC domain
SuperFamilySSF577562.09E-5413467IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.101.2E-4418466IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KVTNEEALKG TLVEIDLHTC EPWQLPEVAK  60
LNANEWYFFS FRDRKYATGF RTNRATTTGY WKATGKDRMV VDPGTGEIVG MRKTLVFYRN  120
RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKGKGE MNSNMSLSPH DLMLESNKSC  180
TVTLTSPPSH HEQNMHCGYS NQITSFSTTP VPHQSHSHSH NNQSSSLLNL LQLSQEKLTD  240
SVTEISAKND DDYGFLWDMN LEESSFENGT LDDMRFEMEN SMGAQDRYAP TALPASQVPH  300
GFSSSIVAYQ QQPLAPMPPQ AQTFMQQAPQ QHPEQQYVSI PAMSYETLSY GFNPIPQQTG  360
FYARRGNGRF NNNNGGNNKF FNNGGNMNFG DNNNNSGNFH NNGMGFNHGF NNSGSSSITC  420
QFCNRPGHGA RTCKTLANLQ NNNFMGNGTG EGCIYCGKRN HPVEKCYYLF GFPNQQQNNN  480
NKPTHTAPQF WLADTGATYH MTNAAQNVNS MTPYNVIMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-45915616165NO APICAL MERISTEM PROTEIN
1ut4_B1e-45915616165NO APICAL MERISTEM PROTEIN
1ut7_A1e-45915616165NO APICAL MERISTEM PROTEIN
1ut7_B1e-45915616165NO APICAL MERISTEM PROTEIN
4dul_A1e-45915616165NAC domain-containing protein 19
4dul_B1e-45915616165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08112.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289955.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A286LLT40.0A0A286LLT4_ROSCH; NAC family protein NAC31
STRINGXP_004289955.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43813359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-89NAC domain containing protein 74