PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna08077.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 265aa MW: 29717.1 Da PI: 4.7275 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.6e-18 | 106 | 156 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + + r++lg+f+++e Aa a+++a+ +l+g mrna08077.1-v1.0-hybrid 106 SYRGVRRRP-WGKYAAEIRDSTR---HgVRVWLGTFDSPEAAALAYDQAAFALRG 156 69*******.**********422...25*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.43E-20 | 105 | 165 | No hit | No description |
SMART | SM00380 | 1.2E-37 | 106 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-22 | 106 | 166 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.13 | 106 | 164 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-13 | 106 | 156 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-29 | 106 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-12 | 107 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-12 | 146 | 166 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MESYSILQFS NPSQFSPESS FGNSSLDSFS WDDALLDTFN NDMLNFPPFN TNDQPQDVLL 60 LDAVAKEPAM VEEETNWFGG AVKEEEVTSD SITFEGFEEK PRKEKSYRGV RRRPWGKYAA 120 EIRDSTRHGV RVWLGTFDSP EAAALAYDQA AFALRGPLAV LNFPVEVVRE SLQEIKCKYD 180 VGCSPVVALK RRHSMRRKSA CKKNSNNKEQ EKGKSSISFN IAKKRTTQEN ITAESNVVVL 240 EDLGAEYLEE LLYQSSCESA SFSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-27 | 107 | 166 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna08077.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289932.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 1B | ||||
Swissprot | A0A3Q7I5Y9 | 1e-63 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A3Q8TB21 | 0.0 | A0A3Q8TB21_FRAAN; Transcription factor ERF85 | ||||
STRING | XP_004289932.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF311 | 33 | 199 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-48 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | mrna08077.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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