PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08075.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 153aa    MW: 17137.8 Da    PI: 8.8541
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08075.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-192375156
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             ++y+G+r+++ +g+++AeIrdps ng  +r +lg+f taeeAa+a+++a+  ++g+
  mrna08075.1-v1.0-hybrid 23 TRYRGIRRRP-WGKYAAEIRDPSRNG--ARLWLGTFETAEEAARAYDRAAFGFRGH 75
                             68********.**********98887..**********************988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-132375IPR001471AP2/ERF domain
CDDcd000181.29E-272383No hitNo description
SuperFamilySSF541713.27E-232483IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-312484IPR001471AP2/ERF domain
SMARTSM003805.6E-352489IPR001471AP2/ERF domain
PROSITE profilePS5103224.8292482IPR001471AP2/ERF domain
PRINTSPR003671.4E-112536IPR001471AP2/ERF domain
PRINTSPR003671.4E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEGERAEGNE RKSKQPIRVR DQTRYRGIRR RPWGKYAAEI RDPSRNGARL WLGTFETAEE  60
AARAYDRAAF GFRGHLAILN FPNEYQYHNP STSSSSFVAS HSVSSSSSTS STSVSSAPAG  120
GGMQFGNEEG RLIEFEYLDN IVLEELLEER RK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-2921851175Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08075.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457997.11e-108PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC55e-43ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3Q8TEE38e-84A0A3Q8TEE3_FRAAN; Transcription factor ERF77
STRINGXP_004292209.11e-107(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.18e-30ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]