PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08073.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 135aa    MW: 15209.7 Da    PI: 9.6746
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08073.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-181767255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+G+r+++ +g+++AeIrdp+ ng   r +lg+++taeeAa+a+++a+  ++g
  mrna08073.1-v1.0-hybrid 17 RYRGIRRRP-WGKYAAEIRDPTRNG--VRRWLGTYDTAEEAARAYDRAAFGFRG 67
                             7********.**********98887..**********************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.81E-231776IPR016177DNA-binding domain
CDDcd000183.12E-281776No hitNo description
PfamPF008471.9E-111766IPR001471AP2/ERF domain
PROSITE profilePS5103224.8161775IPR001471AP2/ERF domain
SMARTSM003809.3E-361781IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-301776IPR001471AP2/ERF domain
PRINTSPR003671.4E-101829IPR001471AP2/ERF domain
PRINTSPR003671.4E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MEGKREQNKP KVRDQNRYRG IRRRPWGKYA AEIRDPTRNG VRRWLGTYDT AEEAARAYDR  60
AAFGFRGRLA ILNFPNESQY HNSSTSSFSP PSSSSFSSAA ANIEKNKGNE GSGVIEFEYL  120
DNVILEELLA TQES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-281412411114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08073.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457995.11e-94PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC56e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3Q8TBH22e-91A0A3Q8TBH2_FRAAN; Transcription factor ERF78
STRINGXP_008235691.14e-52(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.19e-23ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]