PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08072.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 157aa    MW: 16903.6 Da    PI: 7.5091
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08072.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-192073256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr+++ +g+++AeIrd +  g   +r +lg+f taeeAa+a++ a+ +++g+
  mrna08072.1-v1.0-hybrid 20 KYRGVRRRP-WGKFAAEIRDSTRHG-EgARLWLGTFNTAEEAARAYDSAAFSMRGA 73
                             8********.**********43343.36*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-142072IPR001471AP2/ERF domain
CDDcd000182.84E-282080No hitNo description
Gene3DG3DSA:3.30.730.103.6E-302081IPR001471AP2/ERF domain
PROSITE profilePS5103223.6572080IPR001471AP2/ERF domain
SMARTSM003802.1E-332088IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-212081IPR016177DNA-binding domain
PRINTSPR003672.0E-112132IPR001471AP2/ERF domain
PRINTSPR003672.0E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MEGDSSRGSK AKQEGKKCVK YRGVRRRPWG KFAAEIRDST RHGEGARLWL GTFNTAEEAA  60
RAYDSAAFSM RGATAILNFP SEHGLPDSSA ASAVSSPSSS SSSPTSFSAS YSTLQNVEET  120
TRTEPRREVF EIECLDDKGE GGMGYESEAK SHKLPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-322013714112Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid. {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:11768541, ECO:0000269|PubMed:11971137}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08072.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: The stronger expression mediated by Pseudomonas syringae tomato during an incompatible interaction (avirulent T1 avrPto strain) than during a compatible one (virulent T1 strain) requires the resistance PTO-R as well as the Pseudomonas resistance and fenthion sensitivity (PRF) gene products. This induction is independent of ethylene (ET), jasmonate (JA) and salicylic acid (SA), and subsequent transcription of PTI5 does not require de novo protein synthesis. Also induced by Xanthomonas oryzae strain PXOA avrXa10, by Pseudomonas fluorescens strain 2-79, by PTO and by cycloheximide. Seems to not be influenced by abiotic stresses (ET, SA, JA and wounding). {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:9878629}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457996.18e-97PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotO046815e-33PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A3S8T9504e-92A0A3S8T950_FRAAN; Transcription factor ERF82
STRINGXP_004292207.13e-49(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.18e-24ERF family protein