PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna08071.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

ERF

Protein Properties

Length: 147aa MW: 16087 Da PI: 8.4822

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna08071.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.7	3.4e-19	20	70	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd +++g r +lg+f ta eAa+a+++a+ +++g mrna08071.1-v1.0-hybrid 20 KYRGVRRRP-WGKFAAEIRDSTKQG--VRLWLGTFNTATEAARAYDKAAFSMRG 70 8******.******55444..***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	6.41E-22	20	78	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.55	20	78	IPR001471	AP2/ERF domain
CDD	cd00018	2.80E-28	20	78	No hit	No description
Gene3D	G3DSA:3.30.730.10	3.4E-30	20	79	IPR001471	AP2/ERF domain
SMART	SM00380	9.2E-34	20	86	IPR001471	AP2/ERF domain
Pfam	PF00847	1.2E-13	20	70	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-10	21	32	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-10	44	60	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MKEDTSKSNK VEEEGQKYVK YRGVRRRPWG KFAAEIRDST KQGVRLWLGT FNTATEAARA 60 YDKAAFSMRG PLAILNFRSE HGFVDADSAA ATSSCFTASS STLHNTVMRT EPGKEVIVFE 120 VHLPGLHTDE DATAAQLDAI TKPSFA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-29	15	81	9	75	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna08071.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004292207.1	6e-85	PREDICTED: ethylene-responsive transcription factor ERF098-like
TrEMBL	A0A3Q8TD92	1e-77	A0A3Q8TD92_FRAAN; Transcription factor ERF81
STRING	XP_004292207.1	2e-84	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43410.1	8e-31	ERF family protein

Link Out ? help Back to Top
Phytozome	mrna08071.1-v1.0-hybrid