PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna08029.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | Trihelix | ||||||||
Protein Properties | Length: 452aa MW: 51999 Da PI: 6.7414 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 85.7 | 5.7e-27 | 124 | 220 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tse 74 +Wt+++v++Li+a+++++e++++++ +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++ mrna08029.1-v1.0-hybrid 124 KWTDKMVRLLITAVSYIGEDIGSDCgggvrrkfsalQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQ 209 7**********************9888999999999**********************************************5699 PP trihelix 75 ssstcpyfdql 85 ++++ +++d + mrna08029.1-v1.0-hybrid 210 VVENPALLDVI 220 99888887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.8E-24 | 122 | 247 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MDGHLSQGGR IPGGGSYVGL DLQGSMRAHH QTQHPHNLQQ QQQQQHQISR QGSMVHPSIH 60 EGFPVKMGTM HNCDRTLSMV DYNKGEKCKN SMSDEDEPSY TEEGVDSHIE ASRGKKGSPW 120 QRVKWTDKMV RLLITAVSYI GEDIGSDCGG GVRRKFSALQ KKGKWKSVSK VMAERGYHVS 180 PQQCEDKFND LNKRYKKLND MLGRGTSCQV VENPALLDVI DYLTEKEKDD VRKILSSKHL 240 FYEEMCSYHN GNRLHLPHDP ALQHALQEAL RNRDDHDTDD LRRHHHDDLD EDDQDMETDE 300 RDDFEENNVS HGENRGMFGG SGDSVKRLRQ CQGREDINFG GFLNAQDCNK SSYSHPQIAQ 360 GDINQALPDS TKAAWLQKQW IESRSVQLEE QRLQIQVEML ELEKQRLKWQ KFSKKRDREL 420 EKLKMENERM KLENERMALE LKRKEMGAGF S* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 7 | 14 | GGRIPGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna08029.1-v1.0-hybrid |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011458509.1 | 0.0 | PREDICTED: uncharacterized protein LOC101296534 | ||||
TrEMBL | A0A2P6PS33 | 0.0 | A0A2P6PS33_ROSCH; Putative transcription factor Trihelix family | ||||
STRING | XP_004290521.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5001 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-170 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | mrna08029.1-v1.0-hybrid |