PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna07984.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 465aa MW: 52286.2 Da PI: 9.8656 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.9 | 2.3e-08 | 191 | 235 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ E + + +a +++ ++ +W+++a++++ g+t +++ + mrna07984.1-v1.0-hybrid 191 KWTPAENKMFENALALHDKDtpdRWHKVAEMIP-GKTVGDVVQQYK 235 8********************************.****99998876 PP | |||||||
2 | Myb_DNA-binding | 45.5 | 1.7e-14 | 299 | 343 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky mrna07984.1-v1.0-hybrid 299 PWTEDEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 343 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-4 | 185 | 236 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.08 | 187 | 242 | IPR017884 | SANT domain |
SMART | SM00717 | 9.0E-10 | 188 | 240 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.15E-10 | 190 | 244 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.4E-7 | 191 | 235 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.21E-8 | 191 | 237 | No hit | No description |
PROSITE profile | PS51294 | 20.945 | 292 | 348 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.39E-16 | 294 | 348 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-17 | 295 | 347 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 9.5E-12 | 296 | 342 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 296 | 346 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-12 | 299 | 343 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.33E-10 | 299 | 344 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007027 | developmental stage | whole plant fruit formation stage 70% to final size |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MQTTKFRAFY DYKQLEILEQ CPRPDERVDT ASLFFNSTSQ AKKRIISELR GGGWREEAAI 60 TYDGSRKTRE LPPFKANRVM TRVDAASRKT EERRDLPPTF SHSIPPSLSV PIAFSPIYCF 120 SSLVFLIGFP KRLQWVQIPL LVLGVYLGVL GFNIIFNTIP LNFGKLEMGI LSPSSYFSDS 180 NWLPEETKSA KWTPAENKMF ENALALHDKD TPDRWHKVAE MIPGKTVGDV VQQYKELEAD 240 VGKIEAGLVP IPGYGTSPFT LEWVNRHGYD IGFKQTYGIG GKKSSSTRPA DHERKKGVPW 300 TEDEHKLFLM GLKKYGKGDW RNISRNFVVT RTPTQVASHA QKYFIRQHSG GKDKRRASIH 360 DITTVNLGDT CRTPSPDNKP PSPDHHHSSA FSQQPNSARI PPFQWQQGGN GANMAFGQAH 420 GNLFMSNTHG IGSYGLNKSS VHESYYAPQN LAFQMQSAHH YLHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-14 | 192 | 257 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna07984.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294268.1 | 0.0 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-127 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2P6QJQ0 | 0.0 | A0A2P6QJQ0_ROSCH; Putative transcription factor MYB/SANT family | ||||
STRING | XP_004294268.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-100 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | mrna07984.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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