PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna07914.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 702aa    MW: 76583.2 Da    PI: 5.8209
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna07914.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.9e-07282302526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C+ f++ GtC+ Gd C +aHg
  mrna07914.1-v1.0-hybrid 282 PCPEFRK-GTCRQGDACEYAHG 302
                              8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.5E-1435160IPR020683Ankyrin repeat-containing domain
PfamPF127964.6E-774143IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.44E-1275154IPR020683Ankyrin repeat-containing domain
SMARTSM002480.007578108IPR002110Ankyrin repeat
PROSITE profilePS5029712.14378148IPR020683Ankyrin repeat-containing domain
CDDcd002041.02E-980151No hitNo description
SMARTSM002480.85113145IPR002110Ankyrin repeat
PROSITE profilePS500888.843113148IPR002110Ankyrin repeat
SMARTSM003565.4E-5277303IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4282302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784282304IPR000571Zinc finger, CCCH-type
SMARTSM0035654312335IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.625312336IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MCSGSKRKPC STDSTTTDST MDHEKQEGFR YSFSILLELA AADDLDGFRS AVEEDGHDVD  60
EASYWYGRRV GSKKMGFEER TPLMIAAMFG SMNVLNYILQ TCRVDVNRAC GSDRATALHC  120
AATGGSGASA EVVKVLLAAS ADASCIDVNG NQAGDLIAPA YSSSFNSRKK ALEVMLKGVS  180
GLDEAFDYSE QMAREAEGED QQEVTTPRAS KDGTERKEYP VDLSLPDIKN GIYSTDEFRM  240
YTFKVKPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPEFRKGT CRQGDACEYA  300
HGIFECWLHP AQYRTRLCKD ETGCTRRVCF FAHKTEELRP LYASTGSAVP SPRSFSAGAS  360
LDMGSLSPLS LNSPSILIPS VSTPPMTPTG ASSPINGNMW QNQPNIAPPT LQLPGSRLKS  420
TLSARDLDLD MEFLSLENHR RRQRLIEELS SPSSNWNNGL SSPSAFSASG NRMGELNRIG  480
GVRPSNLEDA FGSMDPTMLP QLQGLSRDTT ASQLQSPTGI QMRQNMNMQL RSSYSGSPSS  540
SPVRGSPLHG FDASGAAAVL SSRSAAFAKQ RSQSFIERSA ANHNFGLSSP ADSGSPKPSN  600
LSNWGSPNGK LDWGIQGEEL NKLRKSASFG YRNNGNSFPT VDEPDVSWVN TLVKDAPPPS  660
RPGPLGFEEQ QQQQCHLENG DAEILSAWVE QLYLEQEQMV A*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna07914.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294290.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2P6QK320.0A0A2P6QK32_ROSCH; Putative transcription factor C3H family
STRINGXP_004294290.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein