PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna07861.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 584aa    MW: 65865.8 Da    PI: 6.5852
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna07861.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.81.6e-12461569298
                              EEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHH.HHHHH CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesg.rsWevkliyrkksgryvltkGWke.Fvkan 72 
                              +k+l+ sd + ++rl +pk+ +++h                + ++  +t++d++   + e+ ++y+ +s++yvl+++Wk+ Fv+a 
  mrna07861.1-v1.0-hybrid 461 KKKLKVSDLGDLSRLLVPKRLTKKHvlplmhksldesvH--SSNGGAVTVYDSDMkTKHELVFKYWPSSESYVLQRNWKKdFVNAR 544
                              589999**********************99998887532..224558999998876677788888*************755***** PP

                              T--TT-EEEEEE-SS.SEE..EEEEE- CS
                       B3  73 gLkegDfvvFkldgr.sefelvvkvfr 98 
                              +LkegD + ++ d r s f  ++++++
  mrna07861.1-v1.0-hybrid 545 KLKEGDLIGLYWDARsSAF--LFSLLQ 569
                              ***********88774555..666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF050565.9E-415104IPR007750Protein of unknown function DUF674
PfamPF050567.1E-16111226IPR007750Protein of unknown function DUF674
PfamPF050565.1E-17233374IPR007750Protein of unknown function DUF674
Gene3DG3DSA:2.40.330.101.5E-18456574IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-17456574IPR015300DNA-binding pseudobarrel domain
CDDcd100176.97E-18458568No hitNo description
SMARTSM010193.8E-6460571IPR003340B3 DNA binding domain
PfamPF023624.4E-10462567IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MAGIISLKAL VDKESNKVIF IESDNDFVDV LFSLLTIPIG TIVKLTSRQS VPLHIGCLNN  60
LYESVAKIDA QHFENEAYRD MLLCPQNRAD SYCKNLKLKI DDYVPKGPSL SKQDGSIFVK  120
KASRLMITDD LHVMSPLSAA TCSLITNLGL GNENSEVEQM SFKVDVNQVM ELLMSSLVSK  180
TPLSEILLRN KEQKLTSENL CGRICIGLPD SRDALIENEE KISVKLTDAP WDGCIDHLFK  240
SAHDLDDQYL KSNYHREILL GSKTCPGFSY ENYFFGTEDG FVAPYYYAFW WNSERRLRDI  300
LTTDKSLIPS NAVTVPLKLK NNQSPQGYLK GATMFTVTDK LIIRPLSPIL GFSVLNELKV  360
PIADIKEETV EVGKVEALHL LVASFVCDSA LTNVFFRQLN KDCDPRINPP IVYMAETLLF  420
PSLFASTRVQ DQPCALNQTD NRGLNLGLSL GSIDYDPWFI KKKLKVSDLG DLSRLLVPKR  480
LTKKHVLPLM HKSLDESVHS SNGGAVTVYD SDMKTKHELV FKYWPSSESY VLQRNWKKDF  540
VNARKLKEGD LIGLYWDARS SAFLFSLLQR EVEIDTTLGY WRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna07861.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460900.10.0PREDICTED: uncharacterized protein LOC105350492 isoform X1
TrEMBLA0A251NL531e-129A0A251NL53_PRUPE; Uncharacterized protein
TrEMBLM5W4Q61e-129M5W4Q6_PRUPE; Uncharacterized protein
STRINGEMJ083111e-130(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.18e-20B3 family protein