PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna07815.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 409aa    MW: 46200.6 Da    PI: 4.1966
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna07815.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.71.2e-15281636128
                      NAM   6 rFhPtdeelvveyLkkkvegkk.leleevikevdiyk...vePwdLpk.....kvka.eekewyfFskrdkkya..tgkrknr.at 78 
                               F+Ptd +lv +yL +++   +  + ++ ++e+di+    + Pw +       +    +++ +yfF++ +k ++  +gkr++r + 
  mrna07815.1-v1.0-hybrid  28 TFKPTDAQLVGHYLYNQIMLGHsGNGKQPFPELDICGetgMVPWAIWDsfdpiR--FpHQDFLYFFVRLKKLSPkgKGKRSSRsVG 111
                              5****************8877734455669999999622268****63244322..3244567****9999888335789999556 PP

                      NAM  79 ksgyWkatgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                              + g+W++t ++k+v+    +  vg  + + + +  ++ + ++  W+m+e+++
  mrna07815.1-v1.0-hybrid 112 SGGTWSETETSKPVFIDgFQDPVGRMRKFRYENTkEEFEHQSKAWMMEEFSI 163
                              6899***********9754566999999**99652555677889******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-1618181IPR003441NAC domain
PROSITE profilePS5100519.86723182IPR003441NAC domain
PfamPF023654.0E-1228163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MASCFSSSSM FSVELITLDE LQWGVVKTFK PTDAQLVGHY LYNQIMLGHS GNGKQPFPEL  60
DICGETGMVP WAIWDSFDPI RFPHQDFLYF FVRLKKLSPK GKGKRSSRSV GSGGTWSETE  120
TSKPVFIDGF QDPVGRMRKF RYENTKEEFE HQSKAWMMEE FSIDPSFVPS SSDLVLCRMK  180
RNNNTNKRKR ESEEDEEANA RRTKCFKPQE QVPSHSHHEQ PQLSDINPQE LYCVQELVCE  240
DNVDKEVDQQ GSSGAQHQQI VAPHFDNSYN CIADPVIVTQ NESEDAQLED DTGWLDDVLE  300
EEDPSNSLSE NQISAGDDLI STVTESTDRP LEEESTDQSG YASEGAGGET LPPALLEQHT  360
SASPLMFSQD DDNQTFAFAV DNHFIPMEGA FYFESDDNSN FVFHFENQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna07815.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457371.10.0PREDICTED: uncharacterized protein LOC105349416
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2205423