PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna07554.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bZIP | ||||||||
Protein Properties | Length: 271aa MW: 29591 Da PI: 6.391 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 27.5 | 6.9e-09 | 96 | 140 | 7 | 51 |
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +r NReA r++R++Kka+ + Le++v L a N++L k+l+ mrna07554.1-v1.0-hybrid 96 KKRPLGNREAVRKYREKKKARAASLEDEVIRLRAVNQQLMKRLQG 140 467788**********************************99974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 9.5E-14 | 88 | 158 | No hit | No description |
SMART | SM00338 | 6.6E-9 | 89 | 157 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.76 | 92 | 139 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 4.4E-14 | 92 | 147 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.13E-7 | 95 | 139 | No hit | No description |
CDD | cd14686 | 6.66E-12 | 96 | 149 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071294 | Biological Process | cellular response to zinc ion | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007027 | developmental stage | whole plant fruit formation stage 70% to final size |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MDDGELDFSN QELDFSIPNM TGELPSSCSM ENIFGDFFKE TDTACTHNHI CNPPSGPDSA 60 HRHTCIHVHT KILSSGASED KAGTDDTAES GEKNSKKRPL GNREAVRKYR EKKKARAASL 120 EDEVIRLRAV NQQLMKRLQG QAALEAEIAR LKCLLVDIRG RIEGEIGSFP YQKPVNPGMQ 180 NPNYSSAYVM NPCNMQCDDQ LYCLQRGNDG KRGDGVAMNG QGFSGCEFEN LQCFTNQDGG 240 SMGLSGCDLG NVMLESNGSH SGTKKRKGKN * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna07554.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289872.1 | 0.0 | PREDICTED: uncharacterized protein LOC101314521 | ||||
Swissprot | Q8GTS2 | 1e-102 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | A0A2P6PKW9 | 0.0 | A0A2P6PKW9_ROSCH; Putative transcription factor bZIP family | ||||
STRING | XP_004289872.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2567 | 32 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 3e-90 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna07554.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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