PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna07522.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NF-YA | ||||||||
Protein Properties | Length: 260aa MW: 28715.4 Da PI: 10.1537 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.1 | 5.2e-32 | 100 | 156 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++Il+RRq Rakle+++kl k rkpylheSRh hAl+R+RgsgGrF mrna07522.1-v1.0-hybrid 100 DEPIYVNAKQYRAILRRRQFRAKLEAQNKL-VKVRKPYLHESRHVHALKRARGSGGRF 156 79****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.2E-36 | 98 | 159 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.852 | 99 | 159 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.1E-26 | 101 | 156 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.6E-23 | 102 | 124 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 104 | 124 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 5.6E-23 | 133 | 156 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MASLKEGNPC GLGVVSGYNE IQGRLVGGHK KSLSSITSQE FVFPSQLDFS RSMAHVPFHR 60 AEPYYGGLIA AYGPQAMFHH PQMMGISPGR VPLPLDLTED EPIYVNAKQY RAILRRRQFR 120 AKLEAQNKLV KVRKPYLHES RHVHALKRAR GSGGRFLNMK KLQGSKPNST SHRVDVSGSA 180 QLHLTGNMSE PNVHEADNYR DGASTTSCSD ITSTSNSDDI FPRQDFRFSG YPSHMGGTLQ 240 VPLVDFHGGG NQQHVSIFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-19 | 100 | 161 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna07522.1-v1.0-hybrid |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011467407.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3 | ||||
Refseq | XP_011467408.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3 | ||||
Swissprot | Q93ZH2 | 2e-67 | NFYA3_ARATH; Nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | A0A2P6RYG5 | 1e-172 | A0A2P6RYG5_ROSCH; Putative transcription factor Hap2/NF-YA family | ||||
STRING | XP_004303671.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10120 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 3e-60 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | mrna07522.1-v1.0-hybrid |