PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna07484.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 164aa MW: 18398.6 Da PI: 4.1476 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.6 | 2.5e-07 | 41 | 63 | 24 | 47 |
HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47 W++Ia +++ gRt++ +k++w++ mrna07484.1-v1.0-hybrid 41 WSLIAGRLP-GRTDNVIKNYWYTC 63 *********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.61E-6 | 39 | 71 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-10 | 39 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.77E-4 | 41 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MAVKNAVQCG NVEDAIDKVN DLNLENALDR NLLNYTLSML WSLIAGRLPG RTDNVIKNYW 60 YTCLSKKIQQ KEKQSNNEAN GTIQFPVVDE KLSVADDDQK VHVEMKQECL AAAAGTSAAL 120 IKKEEVIDYE DYSNTYINNI DADEFLNLLN EEEPLSWEVP QIS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna07484.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011468576.1 | 3e-78 | PREDICTED: transcription factor WER-like | ||||
TrEMBL | A0A2P6S0C3 | 1e-60 | A0A2P6S0C3_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004305725.1 | 8e-73 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 2e-11 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | mrna07484.1-v1.0-hybrid |