PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna07470.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CAMTA
Protein Properties Length: 678aa    MW: 76117.3 Da    PI: 6.32
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna07470.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-138.62e-1227771161
                     CG-1 11 neeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkk 61
                             + ei + + n+++++ t  ++++p++gs+i+y++ +v +fr+DGy+wk  k
  mrna07470.1-v1.0-hybrid 27 TLEIWEHIGNHRSYDTTRPPPNKPPNGSIIVYDKSVVDFFRQDGYEWKTEK 77
                             568999999***************************************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143711.37313125IPR005559CG-1 DNA-binding domain
SMARTSM010762.4E-1025120IPR005559CG-1 DNA-binding domain
PfamPF038599.2E-82878IPR005559CG-1 DNA-binding domain
CDDcd001024.77E-4347439No hitNo description
Gene3DG3DSA:2.60.40.107.6E-6350438IPR013783Immunoglobulin-like fold
PfamPF018336.5E-6350435IPR002909IPT domain
SuperFamilySSF812962.8E-13351437IPR014756Immunoglobulin E-set
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MGESSGGVQI QGTPQIIKQE VPGPLSTLEI WEHIGNHRSY DTTRPPPNKP PNGSIIVYDK  60
SVVDFFRQDG YEWKTEKHNP RKGYYACGIP NENFQRRLYW TKDGKGPNSN IVVVHYLELE  120
EQPSQRRRST TTKATIKYGK GHGHDKKRKK VTEYETGSSS WTNSNHLANY GIASRAHHHR  180
LVDHHTPLPP ATYEEDAIWD ELDRQQRDEL GTEPDPGIPQ SNDIGPSCSG TLNHQANTGS  240
GITSVQDDQQ FDQASFGVDY QQQNLYNEDT GPRSWINHQA NTESSILSAD HEQLSDSHFG  300
DNHEEQDSMI QYADLSSLLG DTGAPIDAPT EIILPPMPES PAGSNVVICS IDDFAPDWGY  360
AYTSTKVLIT GSFINSDQQH GESCQWYCVF GEDEVRAEYR SMSNLRCYTP LKKAGRVEFY  420
VKTSHGSVRS DVMLFEFRDR QNQEIDYSGS YGNIEVSQTG FSKPLPTSIT PLTIDPSHEQ  480
RMSEVDQVPD LLELLCEAPP DDKDCHHIDA MQAPKKYGSN KSRRWYKRSV YKGLPNSSVH  540
QENHAQTPVD MNIQVLKGVA LPHLGAAQVV GGAQLLGFSP RSSVVQAKVT LTVDFLVLSH  600
RCCLDSFHPI LSSHNTYETG AKFLWKSSCF LGNRRHGNRR HASLETTVHP PFLSLKLSGE  660
RWRFERTSID LPDLRQI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145149KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna07470.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307186.10.0PREDICTED: calmodulin-binding transcription activator 3-like
STRINGXP_004307186.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.12e-20calmodulin binding;transcription regulators