PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna07458.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 149aa MW: 16324.8 Da PI: 5.1867 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.1 | 2.1e-15 | 30 | 122 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+ +lt+s+v+ ++++++p k h + + +s+ ++ + gr+We++++ +k+s+ v + Wk Fv++n+Lk+gD +vF+l+ mrna07458.1-v1.0-hybrid 30 FDIILTKSHVNPKCQMSIPSKI---HPLLPSCSVPIV-LTFAGRTWEMTCNAaKKTSQVRVDSLSWKAFVDDNNLKVGDGCVFELM 111 77899**************997...578888998887.567*********884555555777789*******************99 PP SSSEE..EEEE CS B3 86 grsefelvvkv 96 + s+++l+++v mrna07458.1-v1.0-hybrid 112 ECSSTKLMFRV 122 66777777765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-17 | 26 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-15 | 26 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.34E-20 | 28 | 126 | No hit | No description |
SMART | SM01019 | 1.8E-4 | 30 | 128 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.983 | 30 | 128 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-13 | 30 | 122 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 149 aa Download sequence Send to blast |
MGDPADQSSS NPATELRGDE FWPLSGKPFF DIILTKSHVN PKCQMSIPSK IHPLLPSCSV 60 PIVLTFAGRT WEMTCNAAKK TSQVRVDSLS WKAFVDDNNL KVGDGCVFEL MECSSTKLMF 120 RVQILRGDIP AELVDKYSGE DAANPFVI* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna07458.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004307182.1 | 1e-107 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
Refseq | XP_011469454.1 | 1e-107 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A2P6SDZ8 | 2e-73 | A0A2P6SDZ8_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004307182.1 | 1e-107 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9722 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-11 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna07458.1-v1.0-hybrid |