PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna07424.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 573aa    MW: 63223.4 Da    PI: 5.6179
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna07424.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.31.4e-11258314155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e Aaka++ a++k++g
  mrna07424.1-v1.0-hybrid 258 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEERAAKAYDLAALKYWG 314
                              78*******************433.44555535555.779999**************98 PP
2AP246.59.5e-15359408355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  mrna07424.1-v1.0-hybrid 359 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 408
                              9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-8258314IPR001471AP2/ERF domain
CDDcd000182.66E-18258324No hitNo description
SuperFamilySSF541713.99E-14258324IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.0E-12259323IPR001471AP2/ERF domain
PROSITE profilePS5103217.029259322IPR001471AP2/ERF domain
SMARTSM003802.3E-21259328IPR001471AP2/ERF domain
PRINTSPR003671.1E-6260271IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18357418IPR016177DNA-binding domain
CDDcd000188.49E-25357418No hitNo description
Gene3DG3DSA:3.30.730.101.5E-18358417IPR001471AP2/ERF domain
SMARTSM003803.9E-34358422IPR001471AP2/ERF domain
PROSITE profilePS5103219.137358416IPR001471AP2/ERF domain
PfamPF008471.8E-9359408IPR001471AP2/ERF domain
PRINTSPR003671.1E-6398418IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIHEGFD GREEDQQEQD HGVVGFPPHM SGMPLRSDGS LCFAADPFRR  60
PDGSEDWRSY ENSMVGATSV TNPVDDDEEG PKLEDFLGSC YSNSPPGDET KLYCQNQEDS  120
KINVNETPNF SNPNSEIEAN STDPSHHQSL IQPYSHYYAN PQSGGALVPC TNDMYKSWLG  180
QTVVVPYAEV KSPSDPEDGS NNFQSNLSLT MSPSLQNGGV LPISQVQLVE SKKRPGGKSS  240
AREPVTRKSL DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CRKEGQTRKG RQGGYDKEER  300
AAKAYDLAAL KYWGPTTHIN FPISTYEKEL EEMKTMTRQE FVANLRRKSS GFSRGASMYR  360
GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGTS AVTNFDMSRY  420
DVKRICSSST LITSDLAKRP SPKDLAPAAP NDQEFNSCAS STSSQPLLAI SNGEEPCDEN  480
LVEMVWNDNS AANTVTLAAA SSSRNSSCPQ SPKCCEYGLN SDFGLSVGDY SHAYFSSLQG  540
AKYEDGNGGS DHSRLGSLGL VQQVPMFALW ND*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna07424.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467428.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-129AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A3Q8TA320.0A0A3Q8TA32_FRAAN; Transcription factor AP23
STRINGXP_004303686.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-116AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]