PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna07405.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 608aa    MW: 66341.4 Da    PI: 6.6796
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna07405.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-08495543348
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                              +WT  E  +lv++v + G+g+W+ I r        Rt  ++k++w+++l
  mrna07405.1-v1.0-hybrid 495 AWTLVEVMKLVEGVSKCGTGRWSEIKRLSFatfSYRTSVDLKDKWRNLL 543
                              7**************************99999989************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.259488547IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-13490549IPR009057Homeodomain-like
SuperFamilySSF466893.67E-16490550IPR009057Homeodomain-like
SMARTSM007178.8E-9492545IPR001005SANT/Myb domain
CDDcd116604.91E-20494544No hitNo description
PfamPF002493.7E-6495543IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MEAVFVVEGN EEGKCEESGV ENSSSSLSSP NQIADPVVYK LVRQVEGDGR LVPATDDEVM  60
EVEDLIVDEQ IELPVVMNTG TAECISNEST SGKPQKESSE GPSASKGTEA DAKLSAHLEE  120
IAPASSLSID ANHINEAGTK GECSKHPDGP IESVSLASAV CTSSKLDFYE SNSEICLDNL  180
SIRELHDLFR ATFGRETSVK DKLWLKRRIT MGLTNSCDVS TTTFTIRNNK LVKKGEENSL  240
RNANDMHIQG SDGGAKNLEY ENSPASHSCP LENHQVVSAK RSGSLSEEEY VSEDHMMDQR  300
AAKRVRKPTK RYIEELSEGD SRDHSPKVIS SAKTSGQEET CPTYSARPLR NVSSNERTIV  360
TRLDSLGGSG VQVPYVSRVR RSRPRKNIMA LMNFNQSGMG VTAKLVKETL SVSTSLPESE  420
CADKVLKARS ASEQIKPLFA AEPEKDKRQS VMGTFEHGKN LGGLKQTDSS EDFSDDSIAA  480
VPTVKGGMRR KHHRAWTLVE VMKLVEGVSK CGTGRWSEIK RLSFATFSYR TSVDLKDKWR  540
NLLKASFAQT PPDDGSRKHV AVPIPASILL KVRELAEMHA QVPPNLGASK LAASVTRSVH  600
QTRSGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379385RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna07405.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467416.10.0PREDICTED: uncharacterized protein LOC101295435 isoform X1
TrEMBLA0A2P6RYJ30.0A0A2P6RYJ3_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004303680.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-102TRF-like 6