PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna07391.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 326aa    MW: 35939.1 Da    PI: 6.3206
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna07391.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.5e-104594154
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                             r++ +  rE+ RRdr+N+ f eL  +l ++     +K++Ka+iL  +++ +k+L
  mrna07391.1-v1.0-hybrid 45 RKMQKADREKLRRDRLNEHFMELGNVLDPD----RPKNDKATILADTIQVLKDL 94
                             5778899*******************9997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-1344112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.4334494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1144116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.71E-94598No hitNo description
PfamPF000109.7E-84594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-850100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MQTLMDQLRP EFPPPSFDSL LPSNRTLPNS SQIPEGEAKD GVAARKMQKA DREKLRRDRL  60
NEHFMELGNV LDPDRPKNDK ATILADTIQV LKDLSSEVDK LKTDCTSLTE ESRELTNEKN  120
ELREEKAALK TDIENLNAQY QQRLRTVFPW GAVDHSVVMA APSYPFPMPM PMPMPPGSIP  180
MHPHMQPYPY FGNQNPGVIP NPCSTFVPYI TPNTLVEQQH TPYASPVVHP ATQSHVSVKK  240
DSRNKSSGAS RNDRSEDSND VTTDLELKTP GSTDQDLSPV QRKSQKSARK ELKGTEGSSS  300
SKCSSSHSAQ GSSSNSVVGG TKDDD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna07391.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289841.10.0PREDICTED: transcription factor bHLH121
RefseqXP_011457920.10.0PREDICTED: transcription factor bHLH121
SwissprotQ9LT232e-96BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A2P6PJ770.0A0A2P6PJ77_ROSCH; Putative transcription factor bHLH family
STRINGXP_004289841.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.22e-85bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]