PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna07364.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28110.7 Da PI: 6.5282 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.7 | 4.2e-20 | 16 | 59 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i+++ +rqvtfskRr g++KKA+ELS+L +ae+avi+ s+ k mrna07364.1-v1.0-hybrid 16 KIQDDNKRQVTFSKRRSGLFKKASELSILSGAEIAVIVESPGRK 59 6999**********************************998665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.249 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.7E-29 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-26 | 8 | 93 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.50E-34 | 8 | 79 | No hit | No description |
PRINTS | PR00404 | 3.0E-17 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-22 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-17 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-17 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEVRTNKGRQ RIEIRKIQDD NKRQVTFSKR RSGLFKKASE LSILSGAEIA VIVESPGRKT 60 FSFGHPSVLT VLDRYENENP PIANNDNTEQ LMEVVRRRKM EDLMTELASI NEDLDMELIK 120 SQQLSQQETV RQAQHWYERF VDGMNDKEQL NFFRNTLREL RGKVAQHIEM LQQEQDEMTQ 180 QNTTILAASG PFGDFMQPSG VVARPLYRGE SSSHNTINLN DVMFPSPHLH PAGPLNPNLG 240 TPPFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-16 | 8 | 98 | 2 | 91 | MEF2 CHIMERA |
6byy_B | 6e-16 | 8 | 98 | 2 | 91 | MEF2 CHIMERA |
6byy_C | 6e-16 | 8 | 98 | 2 | 91 | MEF2 CHIMERA |
6byy_D | 6e-16 | 8 | 98 | 2 | 91 | MEF2 CHIMERA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna07364.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004292149.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2P6PJD7 | 3e-81 | A0A2P6PJD7_ROSCH; Putative transcription factor MADS-type1 family | ||||
STRING | XP_004292149.1 | 0.0 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-37 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | mrna07364.1-v1.0-hybrid |