PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna07361.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20323.2 Da    PI: 8.9115
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna07361.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.95.4e-181662248
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                             +ien++ r+vtfskR+  ilKK +EL++L+ +e avi+ s  +k + 
  mrna07361.1-v1.0-hybrid 16 KIENETYRSVTFSKRKSSILKKSSELCTLTSVEMAVIVRSAGNKTFS 62
                             79*************************************99888665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.17767IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-21766IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-22884IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-13929IPR002100Transcription factor, MADS-box
PfamPF003196.9E-181663IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAARVNRGRQ KIPLQKIENE TYRSVTFSKR KSSILKKSSE LCTLTSVEMA VIVRSAGNKT  60
FSFGHPHVQA IIDRFLLVNP EPLANPYIAN QFLGNFHTII EELNTEYTVV DEEFINCKQQ  120
RDVLTRTDRV CEAEQRYKRL LDYMDREEIN SFERDLVKLH GIVAQRSEGC NKGKIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna07361.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292147.11e-129PREDICTED: agamous-like MADS-box protein AGL62
STRINGXP_004292147.11e-129(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-19AGAMOUS-like 62