PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna07361.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 20323.2 Da PI: 8.9115 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.9 | 5.4e-18 | 16 | 62 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 +ien++ r+vtfskR+ ilKK +EL++L+ +e avi+ s +k + mrna07361.1-v1.0-hybrid 16 KIENETYRSVTFSKRKSSILKKSSELCTLTSVEMAVIVRSAGNKTFS 62 79*************************************99888665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.17 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.2E-21 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-22 | 8 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-13 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.9E-18 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-13 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-13 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MAARVNRGRQ KIPLQKIENE TYRSVTFSKR KSSILKKSSE LCTLTSVEMA VIVRSAGNKT 60 FSFGHPHVQA IIDRFLLVNP EPLANPYIAN QFLGNFHTII EELNTEYTVV DEEFINCKQQ 120 RDVLTRTDRV CEAEQRYKRL LDYMDREEIN SFERDLVKLH GIVAQRSEGC NKGKIS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna07361.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004292147.1 | 1e-129 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
STRING | XP_004292147.1 | 1e-129 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-19 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | mrna07361.1-v1.0-hybrid |