PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna07355.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 333aa    MW: 37043.7 Da    PI: 9.0618
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna07355.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13160207355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              + h ++Er+RR+++ + f  L  ++P +     kK +Ka++L  A++YIk+Lq
  mrna07355.1-v1.0-hybrid 160 QVHIMAERKRREKLSQQFIALSAMVPGL-----KKTDKASVLGDAIKYIKQLQ 207
                              6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.126157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-18159225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-11160207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16161218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-12162211No hitNo description
SMARTSM003531.8E-14163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEISSIGGLT ELGMEDSFFI NQWHMNSLDE LSMLPLAAAF GENLQHSHCH PILNPKTSTN  60
TSQNSIDRPM KQLKPNNWSP PNPQFAALPN LLSFVNSCNT NQVGVAKPKE EKTLCSKSIN  120
NHLPSDVLVS QASFGNQNSL LKAGHGTNRI STNTRLSQTQ VHIMAERKRR EKLSQQFIAL  180
SAMVPGLKKT DKASVLGDAI KYIKQLQEKL KILEEQTRVK KMETVVSVKR SHLIANGDNN  240
STVSFEETLP QIEARFCDNN VLIRVHCEKR KGVVEKTIAE VEKLQLKLIN SSVMTFGSSV  300
VDVTIVAQME VEFCLTVKDL VKNLRSAFDL FM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170ERKRRE
2166171RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna07355.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457907.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A2P6PJG70.0A0A2P6PJG7_ROSCH; Putative transcription factor bHLH family
STRINGXP_004292144.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-58bHLH family protein