PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna07345.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 798aa    MW: 91529.4 Da    PI: 8.4461
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna07345.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3444e-14121212199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              ff + +++d  +++ l lp kf++++   ke s   t+  ++g +W v l  ++  +r++l ++W+ F++   L+ gDf+ F++++
  mrna07345.1-v1.0-hybrid 121 FFRIILQPDQQRQK-LNLPTKFVKKFR--KELSDVATMSIPTGHVWPVGL--ERVNKRVWLVENWQAFAEYYSLRYGDFLEFRYER 201
                              66777788888877.********9997..45777788888**********..999999***************************9 PP

                              SSEE..EEEEE-S CS
                       B3  87 rsefelvvkvfrk 99 
                              +s+f  +v++f++
  mrna07345.1-v1.0-hybrid 202 NSNF--HVSIFDR 212
                              9999..*****98 PP
2B341.32.9e-133474311298
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                              + ++  +p +fae++ +   +s  ++l+ ++g++W+v++  + +++  +  +G  +F  +n+L egD+++F+l+++  +  l+v++
  mrna07345.1-v1.0-hybrid 347 NDDQKHMPTEFAEKYLSG--CSEVIKLQGSHGKQWDVRFA-STNPSLPITCRGCIKFLTDNNLAEGDVCLFELMKSkVDMVLKVSI 429
                              4466779********533..8889***************4.33443455558*********************9876777777777 PP

                              E- CS
                       B3  97 fr 98 
                              +r
  mrna07345.1-v1.0-hybrid 430 LR 431
                              76 PP
3B352.96.8e-175196041299
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                              +   l++p +fa+++ ++ +e   ++l d++g  W+v+ +y + +s+++ +++G + F ++++L++gD+++F+l++r++  l+v+v
  mrna07345.1-v1.0-hybrid 519 NY-HLCIPVDFARKYFSSCAE--SIKLHDSNGGHWDVQRTYtNASSSGHRFSNGYNVFLRDKKLEQGDVCLFELIKRNDVLLKVSV 601
                              33.499*********988555..6*****************5555556***************************99888899999 PP

                              E-S CS
                       B3  97 frk 99 
                              +r+
  mrna07345.1-v1.0-hybrid 602 LRA 604
                              987 PP
4B354.32.4e-177097921399
                              TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                              ++ +v+p +f ++h g+ e+++ +tle ++g++  v++iy+  +++  l++GW+ F ++n+L+egD++vF+l+ +++  l+ ++fr
  mrna07345.1-v1.0-hybrid 709 KSYVVVPARFDTKHLGD-ECPVLITLEAPNGKQCHVRCIYDTDRKK--LSDGWSAFSSENNLEEGDVCVFELIASKDVVLKASIFR 791
                              44589******9**666.5*******************99888877..9************************9999988888888 PP

                              S CS
                       B3  99 k 99 
                              +
  mrna07345.1-v1.0-hybrid 792 A 792
                              5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.16E-16119211No hitNo description
SuperFamilySSF1019362.55E-20119213IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.97120213IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.7E-21120214IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-12121213IPR003340B3 DNA binding domain
PfamPF023625.5E-10121212IPR003340B3 DNA binding domain
PROSITE profilePS508639.996336433IPR003340B3 DNA binding domain
SMARTSM010194.9E-5340433IPR003340B3 DNA binding domain
CDDcd100177.22E-13347431No hitNo description
Gene3DG3DSA:2.40.330.109.4E-15348432IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-11348432IPR003340B3 DNA binding domain
SuperFamilySSF1019361.94E-14349431IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.5E-20503605IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-18505605IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.899507605IPR003340B3 DNA binding domain
CDDcd100176.65E-14509603No hitNo description
SMARTSM010192.4E-10510605IPR003340B3 DNA binding domain
PfamPF023621.3E-13520604IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-19693792IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-18694791IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.914697793IPR003340B3 DNA binding domain
SMARTSM010199.2E-8700793IPR003340B3 DNA binding domain
CDDcd100171.03E-16700791No hitNo description
PfamPF023622.0E-15707792IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MVYSTTIELA TQPSSYPFAR FSFDHTYHTS LRPIAIASVV PQPDEERRSE ANDGGGRRGR  60
GERESKKLYW VMCSPNSWQG LQNPRNFGYL ISLRLKSIPT TAMESKTHRR SDVPARVPFH  120
FFRIILQPDQ QRQKLNLPTK FVKKFRKELS DVATMSIPTG HVWPVGLERV NKRVWLVENW  180
QAFAEYYSLR YGDFLEFRYE RNSNFHVSIF DRTCTEISYP CQEQSSDLHP VVLHQEDIRN  240
DDVSDTLDAI PSLSHASRSV KGKRKCVDER VVEKRHVLHS GSSNKCIQRG ATSKENMGYQ  300
SDDATRRKKT IYVDQGDTID SSIVTKSAPA SLKKNRMASS LELTKQNDDQ KHMPTEFAEK  360
YLSGCSEVIK LQGSHGKQWD VRFASTNPSL PITCRGCIKF LTDNNLAEGD VCLFELMKSK  420
VDMVLKVSIL RAAEYEDTIH SSNVKKSKRA NLDKSIMHDT EDFSTRQSED DGKFAFDIFS  480
HTYPKSKLKF PTETEKVIYA TRMFKLKNPF FVVILQYNNY HLCIPVDFAR KYFSSCAESI  540
KLHDSNGGHW DVQRTYTNAS SSGHRFSNGY NVFLRDKKLE QGDVCLFELI KRNDVLLKVS  600
VLRASEYDDR GHDKEMKVNE TKNRRYRNED EEDLPDLVGR LDDKGKSTAH KLSIEDEENI  660
EICSSGTLYY SSKIEKLVMS KESRRAFSDA KKFHTENAAF LVMLRHYHKS YVVVPARFDT  720
KHLGDECPVL ITLEAPNGKQ CHVRCIYDTD RKKLSDGWSA FSSENNLEEG DVCVFELIAS  780
KDVVLKASIF RAAEYAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1949379520145B3 domain-containing transcription factor VRN1
4i1k_B2e-1949379520145B3 domain-containing transcription factor VRN1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna07345.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011469443.10.0PREDICTED: B3 domain-containing protein Os12g0591400-like isoform X1
TrEMBLA0A2P6SE530.0A0A2P6SE53_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004307175.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2631733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-38B3 family protein