PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna07057.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 324aa    MW: 35931.9 Da    PI: 7.2038
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna07057.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20146196256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                              +y+G+r+++ +g+W+AeIrdp     +   r++lg+f t+eeAa a+++a+k+++g+
  mrna07057.1-v1.0-hybrid 146 KYRGIRQRP-WGKWAAEIRDP-----HqgIRVWLGTFNTPEEAALAYDQAAKRIRGN 196
                              8********.**********7.....336*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-14146195IPR001471AP2/ERF domain
PROSITE profilePS5103223.341146203IPR001471AP2/ERF domain
CDDcd000183.05E-32146202No hitNo description
SuperFamilySSF541711.9E-22146204IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.5E-32146204IPR001471AP2/ERF domain
SMARTSM003801.2E-38146209IPR001471AP2/ERF domain
PRINTSPR003678.5E-11147158IPR001471AP2/ERF domain
PRINTSPR003678.5E-11169185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MLPVPSDSGL IPKKKAQNLC ACFCLYAESY SFLSLEENVS VLLGFTTNMC GGAIISDFIE  60
AKRSRKLTAE DLWSELDTIS DLLGLDYSST NNAQLLHHKL AQKPKVDPIA VTKVAVPTEI  120
KEKKKTTIGI AEKEADGKTK RVRKNKYRGI RQRPWGKWAA EIRDPHQGIR VWLGTFNTPE  180
EAALAYDQAA KRIRGNKAKL NFPATPAPAP APARLQPPSK KRCMAPESTQ SSALAMMGMG  240
PYYPPFQNEC YSKSETTADH DHEYELKEQI SSLEKILGLD EPVTPNEVTS GLGMGEPESS  300
DLWMLDDLVT HHQQQGYDHQ LVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-23147203360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna07057.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3376030.0KP337603.1 Fragaria x ananassa EREBP gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462742.10.0PREDICTED: ethylene-responsive transcription factor RAP2-3
TrEMBLA0A3Q8TBG50.0A0A3Q8TBG5_FRAAN; Transcription factor ERF54
STRINGXP_004296870.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-52ethylene-responsive element binding protein