PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna06857.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YB
Protein Properties Length: 170aa    MW: 18967.2 Da    PI: 5.5793
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna06857.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB152.11.1e-4730120696
                    NF-YB   6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                              ++lPianv+r+mk++lP nakisk+ak+t+qecvsefisfvt+easdkc++e+rkt+ngdd++ al+tlGf+dy++ l+ yl++yr
  mrna06857.1-v1.0-hybrid  30 QLLPIANVGRMMKQILPPNAKISKEAKQTMQECVSEFISFVTGEASDKCRKERRKTVNGDDICCALGTLGFDDYAALLRRYLHRYR 115
                              79************************************************************************************ PP

                    NF-YB  92 elege 96 
                              + eg+
  mrna06857.1-v1.0-hybrid 116 DQEGA 120
                              *9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.0E-3430125IPR009072Histone-fold
Gene3DG3DSA:1.10.20.109.1E-4430132IPR009072Histone-fold
PfamPF008084.7E-263195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-155977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.2E-157896No hitNo description
PRINTSPR006151.2E-1597115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MVDNSGGSVP NNCDHGQGDI NSTEQPDPGQ LLPIANVGRM MKQILPPNAK ISKEAKQTMQ  60
ECVSEFISFV TGEASDKCRK ERRKTVNGDD ICCALGTLGF DDYAALLRRY LHRYRDQEGA  120
EHRANIGNNN NEDELKLLAN NILSTAQEQR IIMIMNQYDH PDHHDIQKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-3730116692Transcription factor HapC (Eurofung)
4g92_B1e-3730116692Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna06857.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296821.11e-125PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotO822482e-49NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2P6QY855e-96A0A2P6QY85_ROSCH; Putative transcription factor Hap3/NF-YB family
STRINGXP_004296821.11e-125(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.18e-42nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]