PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna06793.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 1150aa MW: 129023 Da PI: 9.5711

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna06793.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.8	2.5e-08	109	144	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WTteE + ++++ +++G + Wk++a+ + +R+ +++ mrna06793.1-v1.0-hybrid 109 QWTTEELKHFYEGYRKYGRD-WKKVASVVR-HRSVENV 144 6***************77.*******.9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.969	105	158	IPR017884	SANT domain
SMART	SM00717	0.0087	106	154	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.48E-10	108	154	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.0E-4	109	142	IPR009057	Homeodomain-like
Pfam	PF00249	8.8E-7	109	144	IPR001005	SANT/Myb domain
CDD	cd00167	1.43E-4	110	144	No hit	No description
Pfam	PF06584	3.0E-32	638	738	IPR033471	DIRP domain
SMART	SM01135	4.7E-56	638	739	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1150 aa Download sequence Send to blast
MAVSGELGIK KTGKSLKKRG RPRGSKNKKQ LFFGESSSSM ADSVIHEPLS NEETGGELLR 60 KLFMAPVRKT KGVNKRFPYN NEVASNKYGD NANKNKQKKR KLSDMLGPQW TTEELKHFYE 120 GYRKYGRDWK KVASVVRHRS VENVEALYTM NRAYLSLPEG TASVIGLTAM MSDYYAMLER 180 SESEQESLDD AGTSRKPRKL ARGKLRNDAS KGLEGHIPDI SQSRSIASDG CLSLLKNRRT 240 GIRPHAVKKR TPRVPVASND KDNSKKYFSP ARQGIKTSTD GNDVNNAQEI AFSLTEPSQR 300 GSSPQVSRTP KLKAKGSTPS PVQNGERMFA ATDMKIARPH GGELDEVGCE LSLGGMQADY 360 GMERYYLKRQ KREESENNHL EDVKESSSGT EEEQYNLSTV KGKLGTRVVG AKKASSFHKK 420 KTKTANVGRD EDSSFDALLT LADLSLRMPE ATAELESAAP VEEENFNIAK KSKLKGNSSV 480 TMVEDTTMKT SQFNSGIQKR KQKSPVKINE NEAQTEFPWS DNQMIEATDE VNYVNKGKRS 540 SHYNTHQKHG KLVKPVGNSS PATDRGRQEK NSGLSTVEVQ YANQANLSLR DRSKRKEDIQ 600 KDAKSLQSTS YDQPNKLRRL SNCLSRYQAR RWCAFEWFYS AIDYPWFTKR EFVEYLNHVG 660 LGHVPRLTRV EWGVIRSSLG RPRRFSDQFL KEEKEKLHQY RKSVRKHYAE LNAGTREGLP 720 TDLARPLSVG QHVIAFHPRS REIHNGTVLS IEHSTYRVQF DQPELGVADI MDIDCMPLNP 780 LENVPASFTK QNIIFNKSEN FKELKINEQH KEGKTEGYMK VVSTGNLNSP AVPCHIPPST 840 PQTNKSSKHI EMQAKEADVR ALFELTCALD KKDAVVSELR RMNDDVFEEK CRDGHDSIKD 900 SESFKKEYAA VLLQLSEIND QVSSALLCLR QRNTYRGSYP LISANPLSGF SDSSGHSSSL 960 CHVQEPATHV YEIVESSRAK AREMVHVAMQ AISSLKRENN IERIQEVIDF VSKQLSEDDA 1020 GRLSMGSTPA APILVSEDQS TACTEKSDPM SKSLSNQSED QFLSDLIANC VAALFMIQYP 1080 DKCLSLAYIF MYKMQTCTAR HFSPADVAWV LDRAVTSLKP ICTQNLPVYG EIQKCMGIVR 1140 SQILALVPT*

Sequence ? help Back to Top

Protein Sequence Length: 1150 aa Download sequence Send to blast

MAVSGELGIK KTGKSLKKRG RPRGSKNKKQ LFFGESSSSM ADSVIHEPLS NEETGGELLR  60
KLFMAPVRKT KGVNKRFPYN NEVASNKYGD NANKNKQKKR KLSDMLGPQW TTEELKHFYE  120
GYRKYGRDWK KVASVVRHRS VENVEALYTM NRAYLSLPEG TASVIGLTAM MSDYYAMLER  180
SESEQESLDD AGTSRKPRKL ARGKLRNDAS KGLEGHIPDI SQSRSIASDG CLSLLKNRRT  240
GIRPHAVKKR TPRVPVASND KDNSKKYFSP ARQGIKTSTD GNDVNNAQEI AFSLTEPSQR  300
GSSPQVSRTP KLKAKGSTPS PVQNGERMFA ATDMKIARPH GGELDEVGCE LSLGGMQADY  360
GMERYYLKRQ KREESENNHL EDVKESSSGT EEEQYNLSTV KGKLGTRVVG AKKASSFHKK  420
KTKTANVGRD EDSSFDALLT LADLSLRMPE ATAELESAAP VEEENFNIAK KSKLKGNSSV  480
TMVEDTTMKT SQFNSGIQKR KQKSPVKINE NEAQTEFPWS DNQMIEATDE VNYVNKGKRS  540
SHYNTHQKHG KLVKPVGNSS PATDRGRQEK NSGLSTVEVQ YANQANLSLR DRSKRKEDIQ  600
KDAKSLQSTS YDQPNKLRRL SNCLSRYQAR RWCAFEWFYS AIDYPWFTKR EFVEYLNHVG  660
LGHVPRLTRV EWGVIRSSLG RPRRFSDQFL KEEKEKLHQY RKSVRKHYAE LNAGTREGLP  720
TDLARPLSVG QHVIAFHPRS REIHNGTVLS IEHSTYRVQF DQPELGVADI MDIDCMPLNP  780
LENVPASFTK QNIIFNKSEN FKELKINEQH KEGKTEGYMK VVSTGNLNSP AVPCHIPPST  840
PQTNKSSKHI EMQAKEADVR ALFELTCALD KKDAVVSELR RMNDDVFEEK CRDGHDSIKD  900
SESFKKEYAA VLLQLSEIND QVSSALLCLR QRNTYRGSYP LISANPLSGF SDSSGHSSSL  960
CHVQEPATHV YEIVESSRAK AREMVHVAMQ AISSLKRENN IERIQEVIDF VSKQLSEDDA  1020
GRLSMGSTPA APILVSEDQS TACTEKSDPM SKSLSNQSED QFLSDLIANC VAALFMIQYP  1080
DKCLSLAYIF MYKMQTCTAR HFSPADVAWV LDRAVTSLKP ICTQNLPVYG EIQKCMGIVR  1140
SQILALVPT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna06793.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004296816.1	0.0	PREDICTED: protein ALWAYS EARLY 3
TrEMBL	A0A2P6QY75	0.0	A0A2P6QY75_ROSCH; Putative transcription factor MYB/SANT family
STRING	XP_004296816.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	mrna06793.1-v1.0-hybrid