PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna06791.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 606aa    MW: 64344 Da    PI: 8.6792
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna06791.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.58e-12178203227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              +++ C++++rtG+C yG+rC+++H++
  mrna06791.1-v1.0-hybrid 178 DEADCSYYLRTGICGYGSRCRYNHPR 203
                              6799********************96 PP
2zf-CCCH38.71.7e-12225249327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              ++ C++++rtGtCk+G++Ck++H++
  mrna06791.1-v1.0-hybrid 225 QPVCQYYMRTGTCKFGATCKYHHPK 249
                              689********************96 PP
3zf-CCCH36.29.8e-12269295127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C+++ +tG+Ck+G++CkF+H+p
  mrna06791.1-v1.0-hybrid 269 PGERECSYYVKTGQCKFGATCKFHHPP 295
                              5789*********************97 PP
4zf-CCCH35.91.2e-11430455126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +++++C++++rtG+Ck+G++C+++H+
  mrna06791.1-v1.0-hybrid 430 PGQAECQYYLRTGECKFGSSCRYHHP 455
                              5789*********************8 PP
5zf-CCCH35.22.1e-11478501326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                               +lC ++a+ G Ck+G+ CkF H+
  mrna06791.1-v1.0-hybrid 478 APLCTHYAQRGACKFGSACKFDHP 501
                              68*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.033176204IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5176203IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9178203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6179205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-5182203IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.525222250IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7222249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6223249IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10225249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5227248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446268296IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6268295IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9270295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5271294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4274293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.807429457IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-6429456IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9431455IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5432457IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4435456IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915475503IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6475502IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-9478501IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5479505IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-5480500IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MAALCGGWNN DGCGRGSSRR RCSGLKLVAA AAAKGFTIVG IYGLLTYYAS LRVSPVFLLQ  60
RRRRRSQYQS LVLKERIAAV EVGQETQNLC DASNRRAQEA TEVVCSTTLC NRNPVLSFVV  120
CFQVFGRGRT MERYGRSTEG SQSDPSPEWT APGPETGLEE SMWQLALGPG ESYPERPDEA  180
DCSYYLRTGI CGYGSRCRYN HPRDRSAVTG ALRAGSVEYP ERVGQPVCQY YMRTGTCKFG  240
ATCKYHHPKQ GGGSATPVSL NYYGYPLRPG ERECSYYVKT GQCKFGATCK FHHPPLTSTQ  300
PQVPSQAQAS IVPTPTLYQT VQSPSVSSQP YGTVMVARPP LLPSSYVQSP YGPMLIPPGM  360
VPFSGWSPYP AGASPLASPS TQTAVGSGAL YGINQISPSA PAYTGIFPTA PFSLGPPTTS  420
QKEQSHPERP GQAECQYYLR TGECKFGSSC RYHHPAEVVP LKTPVALSST GLPSRPGAPL  480
CTHYAQRGAC KFGSACKFDH PVGTLSYSPS ASSLTDVPVA PYPVGSSIGT LAPSSSSSEL  540
RPELNSGTSK DSASTRMSSS PSTVSGSVGS TVSKDGVTHL GDQQSAQGSG PSTTSDNSTE  600
SHSSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna06791.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296815.10.0PREDICTED: zinc finger CCCH domain-containing protein 34
SwissprotQ6NPN31e-158C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A2P6QY680.0A0A2P6QY68_ROSCH; Putative transcription factor C3H family
STRINGXP_004296815.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-150C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]