PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna06790.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 329aa    MW: 36738.3 Da    PI: 4.9976
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna06790.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.7e-182472355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             + GVr+++ +gr++AeIrdps+   + r++lg+f+ta+eAa a+++a+++++g
  mrna06790.1-v1.0-hybrid 24 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAQEAALAYDRAALSMKG 72
                             56******.**********965...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.30E-282379No hitNo description
PROSITE profilePS5103220.5472380IPR001471AP2/ERF domain
SMARTSM003802.0E-322386IPR001471AP2/ERF domain
PRINTSPR003671.2E-72435IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-202481IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-282480IPR001471AP2/ERF domain
PfamPF008472.7E-112672IPR001471AP2/ERF domain
PRINTSPR003671.2E-74662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEKPLTQSGE RSRGRRKQAE PGRFLGVRRR PWGRYAAEIR DPSTKERHWL GTFDTAQEAA  60
LAYDRAALSM KGAQARTNFI YSDNSTFHSL LTPFDVQTLL PQQSLEFFTS TTTQTPRQQQ  120
QPTHQNTPPA QSSMFYQNER NPNLRSNEKP SFDALFFSND FSSDNSGYLG CIVPDNCLRP  180
PSDIPKSSEF TTTHALDIDH QNFSFTNSSI QTQPHCDQSS TATTFPLDVM NVPASIMASS  240
SNPGDQPSCF DGFSHGFWGD NQQYSSLDQL NSRELSTMVD SNLFMTEDGC NIEALYPIIE  300
NQSTSSFSCS PSVHPFGDVV IEFGHSLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-201479571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna06790.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298113.20.0PREDICTED: ethylene-responsive transcription factor ERF086
TrEMBLA0A3S8T9420.0A0A3S8T942_FRAAN; Transcription factor ERF66
STRINGXP_004298113.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.11e-43ERF family protein