PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna06669.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 401aa    MW: 44254.5 Da    PI: 8.4288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna06669.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-20209259256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+ge
  mrna06669.1-v1.0-hybrid 209 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAASAYDTAAYMLRGE 259
                              59******9.**********955...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.93E-33208268No hitNo description
PROSITE profilePS5103223.103209266IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-32209268IPR001471AP2/ERF domain
SMARTSM003802.0E-36209272IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-23209268IPR016177DNA-binding domain
PRINTSPR003672.8E-11210221IPR001471AP2/ERF domain
PfamPF008479.5E-14210259IPR001471AP2/ERF domain
PRINTSPR003672.8E-11232248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDDDFPKKET FIPKQLPYFP GMASSTGSNF LGDPAGWEIG GLKSSLSPES STSSSADEVS  60
GNSTLINNTY PFVPVNFLET FPKADHVSDQ PPTSPASLSS KPSKLPNLTL FLQEPTTLLD  120
PSSTKKCDDS MLSSLTPSFP IPHLEHCQTG FDQWLKITQT LANNPSKGFN DYWLSTTKTQ  180
PMKCSGRSRF QNQQQKQPSA PIPSAQGKLY RGVRQRHWGK WVAEIRLPRN RTRVWLGTFD  240
TAEEAASAYD TAAYMLRGEY AHLNFPDSKH QLKANALNGS TSTTAALLEA KIQLAISQQA  300
NKKRNTMESS SSSSPPSPKK KKQSSADDRD QKNSNLIINS NLISQNPSTR KEWQYGSDQV  360
IFESKKSQDV ISSSDMDAVQ LSRMPSLDMD MIWDALLVSD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21205266163ATERF1
3gcc_A5e-21205266163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301321KKRNTMESSSSSSPPSPKKKK
2315322PSPKKKKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna06669.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296759.10.0PREDICTED: ethylene-responsive transcription factor ERF062
TrEMBLA0A3Q8TB160.0A0A3Q8TB16_FRAAN; Transcription factor ERF2
STRINGXP_004296759.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.14e-56ERF family protein