PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna06570.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 545aa    MW: 60632.5 Da    PI: 6.2339
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna06570.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind70.92.5e-22171742101
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHH.......................HHHHHHTTEEE CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSF.......................vRQLnmYgFkk 64 
                              Fl k+y++++d++++e++sws+n++sfvv+++ efa+ +Lp+yFkh+nf+SF                                  
  mrna06570.1-v1.0-hybrid  17 FLLKTYDMVDDSATDEIVSWSSNKKSFVVWNPPEFARLLLPTYFKHNNFSSFiliqmgvgavdhtfglpsefskvQ---------- 92 
                              9***************************************************766666555554444444444433.......... PP

                              ---SSBTTTT.................................................XTTSEEEEESXXXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  65 vkdeekksks.................................................kekiweFkhksFkkgkkellekikrkk 101
                                +e +   +                                                 +++ weF++++F +++k+ll++i+r+k
  mrna06570.1-v1.0-hybrid  93 --KEMEM--HfhslghasnirmtecqewkhganimglyvhdllgnikviephdigfrkiDPERWEFANEEFIQDQKHLLKNIHRRK 174
                              ..33333..133666666666679******************9999999888877765449***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.5E-271394IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-171369IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-3613173IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-1917173IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-101740IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-105567IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.5E-27141173IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MDGTAGGGGG GGGPAPFLLK TYDMVDDSAT DEIVSWSSNK KSFVVWNPPE FARLLLPTYF  60
KHNNFSSFIL IQMGVGAVDH TFGLPSEFSK VQKEMEMHFH SLGHASNIRM TECQEWKHGA  120
NIMGLYVHDL LGNIKVIEPH DIGFRKIDPE RWEFANEEFI QDQKHLLKNI HRRKPIHSHS  180
NPQGSMVDQE RAALDDEIEK LSNEKAALEA NISRFQQQRS AEKLQLEDLT QRVNGMEQRQ  240
KNLHTFLDKA VQNPFFVEHL ARKIESMDFS AYNKKRRLPV AELSQPVVEN SFMDNQSSSR  300
PEFGNIFHQD FSSKLRLELS PTVSDINPVS HSTQSSNEDG DSSTRKISED LKGAQMRTKG  360
LLFANEPLEL SDTGTSFAFK MDSVSRKSTS GGSPGFHSLQ PGLPSNEDSD GLIACHLNLT  420
LSSSPLKVIS SPHSATVPLI GQDISNSPSS GLNANDKESD IRALLHHNLA DEDRPKNSPK  480
EATKHSKGHA SGPVRVNDVF WEQFLTERPG CSENEEASSN FKENLYDGHD RMARNAKGTE  540
TLTL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna06570.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298212.20.0PREDICTED: heat stress transcription factor A-5
TrEMBLA0A1B0V8K60.0A0A1B0V8K6_FRAVE; Heat shock factor A5a
STRINGXP_004298212.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-116HSF family protein