PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna06460.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 224aa    MW: 25092.2 Da    PI: 8.5541
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna06460.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.31.6e-4941281128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrF+Ptdeelv +yL+ kv + +l++ ++i+e++++ ++PwdLp      e+e yfFs++++ky++g+r+nr+t+sgyWkat
  mrna06460.1-v1.0-hybrid   4 LPPGFRFQPTDEELVFQYLRCKVFSCPLPA-SIIPEINVCVYDPWDLPGD---LEQERYFFSNKESKYPNGNRTNRVTSSGYWKAT 85 
                              79****************************.89***************54...46799**************************** PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g+dk+++s+ +++ vg kk+Lvfy+g+ap+g+ktdWvmhey+l
  mrna06460.1-v1.0-hybrid  86 GSDKKIVSArRNNIVGKKKSLVFYRGKAPNGSKTDWVMHEYSL 128
                              *******9867778***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-582157IPR003441NAC domain
PROSITE profilePS5100555.484157IPR003441NAC domain
PfamPF023651.8E-255128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MTRLPPGFRF QPTDEELVFQ YLRCKVFSCP LPASIIPEIN VCVYDPWDLP GDLEQERYFF  60
SNKESKYPNG NRTNRVTSSG YWKATGSDKK IVSARRNNIV GKKKSLVFYR GKAPNGSKTD  120
WVMHEYSLVN NLGTRALSTE NSINQQGNWV LCRIFLKKRS SHKDEDNLLN YDGFKVNNAE  180
KGQLQITRTT PVSSCSSCSS CSGITEVSSS HEAGDEEISG CAH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-48416317171NO APICAL MERISTEM PROTEIN
1ut4_B2e-48416317171NO APICAL MERISTEM PROTEIN
1ut7_A2e-48416317171NO APICAL MERISTEM PROTEIN
1ut7_B2e-48416317171NO APICAL MERISTEM PROTEIN
4dul_A2e-48416317171NAC domain-containing protein 19
4dul_B2e-48416317171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna06460.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297508.11e-167PREDICTED: NAC transcription factor 29
SwissprotQ9FY938e-75NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2P6P4P61e-138A0A2P6P4P6_ROSCH; Putative transcription factor NAM family
STRINGXP_004297508.11e-167(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-76NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]