PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna06448.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 367aa MW: 40526.7 Da PI: 9.517 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.1 | 3.1e-08 | 203 | 250 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k a +L + ++Y++sLq mrna06448.1-v1.0-hybrid 203 SHSLAERVRREKISERMKMLQRLVPGC----DKVTGRAVMLDEIINYVQSLQ 250 8*************************9....55599***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-16 | 197 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.38E-10 | 197 | 254 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-16 | 199 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.212 | 199 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-5 | 203 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-10 | 205 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MGEAVYGIGR VKATLKLSSP LLSTPLISSR MMVRRKAAST MRIMLPLAAG TPNSTNTNNL 60 HFSQSHYPSE PLVEQMNIPG DQSARVAESS SCIDQSSAKI ATFSDNEPSV TKKQSPESSS 120 VVDKLETGEQ VTQKVTTPIE RKRRTRNCSS PSSAQSKVKK QKKAEEEKKS KAEKKEQKKA 180 VQEVEPPTGY IHVRARRGQA TDSHSLAERV RREKISERMK MLQRLVPGCD KVTGRAVMLD 240 EIINYVQSLQ NQVEFLSMKL ASVNPMFYEF GPDLGDLMVK QEASPFSTGP QCSPTQPTNF 300 ADTSTTAATT TFTAATNNYP FLDSLLHQSP RPTAFHQDNE SLLWDGEDQR QSFLNPSGFN 360 NLCSFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 161 | RKRRTRNCSSPSSAQSKVKKQK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna06448.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU240878 | 3e-74 | EU240878.1 Citrus sinensis cultivar Moro Nucellare 58-8D-1 putative bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004298536.2 | 0.0 | PREDICTED: transcription factor bHLH137 | ||||
TrEMBL | A0A2P6P4N1 | 0.0 | A0A2P6P4N1_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004298536.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4182 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 7e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna06448.1-v1.0-hybrid |