PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna06407.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 298aa MW: 33137.1 Da PI: 4.9193 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1.1e-19 | 116 | 165 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae Aa a+++a+++++g mrna06407.1-v1.0-hybrid 116 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAALAYDEAALRFKG 165 7********.**********94....45***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.7E-33 | 115 | 174 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-37 | 116 | 179 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-13 | 116 | 165 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.25E-21 | 116 | 174 | No hit | No description |
PROSITE profile | PS51032 | 24.948 | 116 | 173 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-22 | 116 | 174 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.1E-11 | 117 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-11 | 139 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MENDDQPCAM DHRKHGKRAF PGDGSEETEE EGGEDQEVFF PAAPFCSAAS SARSQQEMSA 60 MVSVLSRVIS GDSSTDTDPN PALLQLPQQS STATPELDQS HQQAAPDQAG SVRRRHYRGV 120 RQRPWGKWAA EIRDPKKAAR VWLGTFETAE AAALAYDEAA LRFKGSKAKL NFPERVQGTS 180 ESGGYLTTQT VAHQPLISDY HQQQLVYPNN ITTTDQYYPQ FYGNLNYGQP DPRFYNQPAT 240 SSYPPFIPIS QAQEEDRQQQ PALSSPMPDF GSPSSSLHPE YPQYDTTRNF DNSHWRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-26 | 115 | 176 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna06407.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011463208.1 | 1e-178 | PREDICTED: ethylene-responsive transcription factor ERF113-like | ||||
Swissprot | Q9FH54 | 3e-47 | EF114_ARATH; Ethylene-responsive transcription factor ERF114 | ||||
TrEMBL | A0A3Q8TA24 | 1e-152 | A0A3Q8TA24_FRAAN; Transcription factor ERF88 | ||||
STRING | XP_004298522.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF985 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 3e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna06407.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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