PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna06406.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 339aa MW: 37470.8 Da PI: 9.1639 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.4e-19 | 140 | 189 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa a+++a+++++g mrna06406.1-v1.0-hybrid 140 HYRGVRRRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAALAYDEAALRFKG 189 69*******.**********7.....337***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.96E-20 | 139 | 198 | No hit | No description |
Pfam | PF00847 | 2.1E-13 | 140 | 189 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.067 | 140 | 197 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-22 | 140 | 198 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-32 | 140 | 198 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-36 | 140 | 203 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 141 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 163 | 179 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MIWLPPVLLL NLSAAPSGVL MTSLLEKIYR LIIDTNILTD KVDRKHGKRP LPSNESEKKE 60 EEVEYHRNIF PVYSSRSQQD DSAMVSALTQ VIGNTTHEQN PLQVIDHQVL GNPQVFSAEN 120 PVEQSQPAVV LQAQGNVRQH YRGVRRRPWG KWAAEIRDPH KAARVWLGTF ETAEAAALAY 180 DEAALRFKGS KAKLNFPERV QGISPSTSSG LYLAISTSTG HDHRLANSAP PAAPISRPTT 240 YSINPNNVNI DYDALVSSSQ NHGQERTMPQ INVQTTLSST SSASSMPSHH QQERVQQQED 300 QQQLLKFPIM PFGGSSSSSS DPPTKYRRDS SGSGDFRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-26 | 139 | 200 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna06406.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011463207.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF113-like | ||||
TrEMBL | A0A3Q8TBH4 | 1e-146 | A0A3Q8TBH4_FRAAN; Transcription factor ERF90 | ||||
STRING | XP_004298521.1 | 0.0 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 1e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna06406.1-v1.0-hybrid |