PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna06406.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 339aa    MW: 37470.8 Da    PI: 9.1639
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna06406.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-19140189255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa a+++a+++++g
  mrna06406.1-v1.0-hybrid 140 HYRGVRRRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAALAYDEAALRFKG 189
                              69*******.**********7.....337***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.96E-20139198No hitNo description
PfamPF008472.1E-13140189IPR001471AP2/ERF domain
PROSITE profilePS5103225.067140197IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-22140198IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-32140198IPR001471AP2/ERF domain
SMARTSM003804.9E-36140203IPR001471AP2/ERF domain
PRINTSPR003673.4E-11141152IPR001471AP2/ERF domain
PRINTSPR003673.4E-11163179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MIWLPPVLLL NLSAAPSGVL MTSLLEKIYR LIIDTNILTD KVDRKHGKRP LPSNESEKKE  60
EEVEYHRNIF PVYSSRSQQD DSAMVSALTQ VIGNTTHEQN PLQVIDHQVL GNPQVFSAEN  120
PVEQSQPAVV LQAQGNVRQH YRGVRRRPWG KWAAEIRDPH KAARVWLGTF ETAEAAALAY  180
DEAALRFKGS KAKLNFPERV QGISPSTSSG LYLAISTSTG HDHRLANSAP PAAPISRPTT  240
YSINPNNVNI DYDALVSSSQ NHGQERTMPQ INVQTTLSST SSASSMPSHH QQERVQQQED  300
QQQLLKFPIM PFGGSSSSSS DPPTKYRRDS SGSGDFRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-26139200163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna06406.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463207.10.0PREDICTED: ethylene-responsive transcription factor ERF113-like
TrEMBLA0A3Q8TBH41e-146A0A3Q8TBH4_FRAAN; Transcription factor ERF90
STRINGXP_004298521.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-42ERF family protein