PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna06313.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YC
Protein Properties Length: 333aa    MW: 36430.7 Da    PI: 8.4529
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna06313.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.56.1e-56481521102
                    NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 
                              ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+
  mrna06313.1-v1.0-hybrid  48 QLQMFWNYQrheIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAI 133
                              89*****999999************************************************************************* PP

                    NF-YC  84 trtdifdflvdivprdelk 102
                              trtdifdflvdivprde+k
  mrna06313.1-v1.0-hybrid 134 TRTDIFDFLVDIVPRDEIK 152
                              ****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.69E-3343142IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.0E-3762134IPR009072Histone-fold
PfamPF008081.5E-2070133IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF1034566.28E-12268328IPR023391Protein translocase SecE domain
Gene3DG3DSA:1.20.5.8208.0E-7269321IPR023391Protein translocase SecE domain
TIGRFAMsTIGR003272.9E-15271329IPR008158Protein translocase SEC61 complex, gamma subunit
HamapMF_0042212.766272327IPR022943Preprotein translocase subunit SecE
PfamPF005844.5E-11276328IPR001901Protein translocase complex, SecE/Sec61-gamma subunit
PROSITE patternPS010670277305IPR001901Protein translocase complex, SecE/Sec61-gamma subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006605Biological Processprotein targeting
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0016020Cellular Componentmembrane
GO:0015450Molecular FunctionP-P-bond-hydrolysis-driven protein transmembrane transporter activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MENNNSNSNP VAATTVPAAT YPPTQPPPPP SSVAAPPFHH LLQAQQQQLQ MFWNYQRHEI  60
EQVNDFKNHQ LPLARIKKIM KADEDVRMIS AEAPVLFAKA CELFILELTI RSWLHAEENK  120
RRTLQKNDIA AAITRTDIFD FLVDIVPRDE IKDEAGLGGV AMVGATASGV PYYYPPIGQP  180
AGAPGGMMIG RPAMDPTGVY AQPPSQAWQS VWQTAADDVS YGSGGSSGQG NLDGQRQPPV  240
CKLDTRSGDI TGQRPASVRE KRKMDAIDSV VDPLREFAKD SARLVKRCHK PDRKEFSKVA  300
LRTAIGFVVM GFVGFFVKLI FIPINNIIVG SV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B7e-5356148395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna06313.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463262.11e-175PREDICTED: nuclear transcription factor Y subunit C-1
SwissprotQ9FMV51e-109NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA0A2P6P4X81e-129A0A2P6P4X8_ROSCH; Putative transcription factor Hap3/NF-YB family
STRINGXP_004297579.11e-174(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110713038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.12e-88nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  2. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  3. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  4. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Qi M, et al.
    QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.
    Plant Biotechnol. J., 2019. 17(1): p. 252-263
    [PMID:29878511]